microsynteny-tools: Explore microsyntenic differences among species

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Sun Mar 6 18:42:41 2022 -0600
Changeset:	f9e6538a00a261a792b504eb512b8a867c7b8a79

Modified Files:
	Makefile
Added Files:
	microsynteny-tools/DESCR
	microsynteny-tools/Makefile
	microsynteny-tools/PLIST
	microsynteny-tools/distinfo

Log Message:
microsynteny-tools: Explore microsyntenic differences among species

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=f9e6538a00a261a792b504eb512b8a867c7b8a79

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 Makefile                    |  1 +
 microsynteny-tools/DESCR    |  4 ++++
 microsynteny-tools/Makefile | 22 ++++++++++++++++++++++
 microsynteny-tools/PLIST    |  9 +++++++++
 microsynteny-tools/distinfo |  5 +++++
 5 files changed, 41 insertions(+)

diffs:
diff --git a/Makefile b/Makefile
index dc5f7b2ade..078ab92b8b 100644
--- a/Makefile
+++ b/Makefile
@@ -2400,6 +2400,7 @@ SUBDIR+=	microbiomeutil
 SUBDIR+=	microblog-purple
 SUBDIR+=	microcom
 SUBDIR+=	micropolis
+SUBDIR+=	microsynteny-tools
 SUBDIR+=	microtetris
 SUBDIR+=	mid2gmc
 SUBDIR+=	miktex
diff --git a/microsynteny-tools/DESCR b/microsynteny-tools/DESCR
new file mode 100644
index 0000000000..d9fb2a427f
--- /dev/null
+++ b/microsynteny-tools/DESCR
@@ -0,0 +1,4 @@
+Microsynteny tools is a suite of fast, memory-efficient programs for
+exploring microsyntenic relationships between genes.
+The tools are designed to allow real-time exploration of gene
+landscapes via the command line and shell scripts.
diff --git a/microsynteny-tools/Makefile b/microsynteny-tools/Makefile
new file mode 100644
index 0000000000..4d43ee6db4
--- /dev/null
+++ b/microsynteny-tools/Makefile
@@ -0,0 +1,22 @@
+# $NetBSD$
+#
+###########################################################
+#                  Generated by fbsd2pkg                  #
+#              Sun Mar  6 18:38:30 CST 2022               #
+###########################################################
+
+DISTNAME=	microsynteny-tools-0.1.0.53
+CATEGORIES=	biology
+MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
+GITHUB_TAG=	18985df2dbb33b79aad50f11678d802b94e42355
+
+MAINTAINER=	bacon%NetBSD.org@localhost
+HOMEPAGE=	https://github.com/auerlab/microsynteny-tools
+COMMENT=	Tools for exploring microsyntenic differences among species
+LICENSE=	2-clause-bsd
+
+REPLACE_PYTHON=	*.py
+
+.include "../../wip/biolibc/buildlink3.mk"
+.include "../../lang/python/application.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/microsynteny-tools/PLIST b/microsynteny-tools/PLIST
new file mode 100644
index 0000000000..8313b7f7d1
--- /dev/null
+++ b/microsynteny-tools/PLIST
@@ -0,0 +1,9 @@
+@comment $NetBSD$
+bin/ms-extract
+bin/ms-intersect
+bin/ms-plot
+bin/ms-stack
+man/man1/ms-extract.1
+man/man1/ms-intersect.1
+man/man1/ms-plot.1
+man/man1/ms-stack.1
diff --git a/microsynteny-tools/distinfo b/microsynteny-tools/distinfo
new file mode 100644
index 0000000000..a45180840f
--- /dev/null
+++ b/microsynteny-tools/distinfo
@@ -0,0 +1,5 @@
+$NetBSD$
+
+BLAKE2s (microsynteny-tools-0.1.0.53-18985df2dbb33b79aad50f11678d802b94e42355.tar.gz) = 8f006cbd0ec38dba2deb222d93a068f9b8cd5bc495038dacb5f389b300f82d74
+SHA512 (microsynteny-tools-0.1.0.53-18985df2dbb33b79aad50f11678d802b94e42355.tar.gz) = 33bef97820ca7f4b7f046f6a0a992268017013d276ced07e2af411a27c5158adeceaf505b5536e9541963da790c4be3dd20365ca84517f95e0a7fc7d67d94ee4
+Size (microsynteny-tools-0.1.0.53-18985df2dbb33b79aad50f11678d802b94e42355.tar.gz) = 388797 bytes