pkgsrc-WIP-changes by thread

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• nltk: Update wip/nltk to 3.2.5, Leonardo Taccari
  • Re: nltk: Update wip/nltk to 3.2.5, Leonardo Taccari
• py-cutadapt: Fix bl3 variables, Jason Bacon
• Remove atool after import., Benny Siegert
• p5-trimgalore: Clean up, Jason Bacon
• omnispeak: import omnispeak-1.0 as wip/omnispeak, Yorick Hardy
• Add fastqc: Quality control tool for high through, Jason Bacon
• py-xopen: Open compressed files, dep for py-cutada, Jason Bacon
• py-cutadapt: Fix bl3, Jason Bacon
• Add py-cutadapt: Finds and removes adapter sequen, Jason Bacon
• p5-trimgalore: Add note on dependencies, Jason Bacon
• p5-IPC-Open3-Simple: Simple alternative to IPC::Op, Jason Bacon
• mackerel-agent: update to 0.47.1, miwarin
• p5-trimgalore: Wrapper around Cutadapt and FastQC, Jason Bacon
• htslib, samtools: Upgrade to latest release, Jason Bacon
• compiler-rt-netbsd: Sync with local enhancements, Kamil Rytarowski
• Pass portability checks for mingw-w64-binutils, Pierre Pronchery
• py-macs2: Successful build, Jason Bacon
• Novel algorithm for identifying transcript factor , Jason Bacon
• freedoom: Update wip/freedoom to 0.11.3, Leonardo Taccari
• dosemu2: Add scratch of NetBSD porting files, Kamil Rytarowski
• wip/dosemu2: import dosemu2-2.0nb20171102, Kamil Rytarowski
• Update fswatch to 1.11.2., Filip Hajny
• libpwquality: move away from fedorahosted., coypu
• mlocate: homepage and mastersites fedorahosted->pa, coypu