pkgsrc-WIP-changes by thread

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• p5-Net-Whois-RIPE: update to 2.006002., Thomas Klausner
• p5-File-Map: update to 0.65., Thomas Klausner
• p5-Sub-Prototype: add new package, Thomas Klausner
• gnucash-devel: add package for latest development , Thomas Klausner
• compiler-rt-netbsd: Revamp local patches for atexi, Kamil Rytarowski
• binutils-gold-git: Drop two local patches no longe, Kamil Rytarowski
• omnispeak: add an option to use SDL-1.2 for displa, Yorick Hardy
• compiler-rt-netbsd: Upgrade to SVN r. 317430, Kamil Rytarowski
• clang-netbsd: Upgrade to SVN r. 317430, Kamil Rytarowski
• lldb-netbsd: Upgrade to SVN r. 317430, Kamil Rytarowski
• llvm-netbsd: Upgrade to SVN r. 317430, Kamil Rytarowski
• doc/TODO: + js-Gallery-2.28.0., Thomas Klausner
• neovim-git: Changes in PLIST, Jonathan Buschmann
  • <Possible follow-ups>
  • neovim-git: Changes in PLIST, Jonathan Buschmann
• retroarch-assets: Update to 20171101 (Add new icon, Nia Alarie
• libretro-gambatte: Update to 20171024, cuz digests, Nia Alarie
• py-textblob: Update wip/py-textblob to 0.13.0, Leonardo Taccari
• nltk: Update wip/nltk to 3.2.5, Leonardo Taccari
  • Re: nltk: Update wip/nltk to 3.2.5, Leonardo Taccari
• py-cutadapt: Fix bl3 variables, Jason Bacon
• Remove atool after import., Benny Siegert
• p5-trimgalore: Clean up, Jason Bacon
• omnispeak: import omnispeak-1.0 as wip/omnispeak, Yorick Hardy
• Add fastqc: Quality control tool for high through, Jason Bacon
• py-xopen: Open compressed files, dep for py-cutada, Jason Bacon
• py-cutadapt: Fix bl3, Jason Bacon
• Add py-cutadapt: Finds and removes adapter sequen, Jason Bacon
• p5-trimgalore: Add note on dependencies, Jason Bacon
• p5-IPC-Open3-Simple: Simple alternative to IPC::Op, Jason Bacon
• mackerel-agent: update to 0.47.1, miwarin
• p5-trimgalore: Wrapper around Cutadapt and FastQC, Jason Bacon
• htslib, samtools: Upgrade to latest release, Jason Bacon
• compiler-rt-netbsd: Sync with local enhancements, Kamil Rytarowski
• Pass portability checks for mingw-w64-binutils, Pierre Pronchery
• py-macs2: Successful build, Jason Bacon
• Novel algorithm for identifying transcript factor , Jason Bacon
• freedoom: Update wip/freedoom to 0.11.3, Leonardo Taccari
• dosemu2: Add scratch of NetBSD porting files, Kamil Rytarowski
• wip/dosemu2: import dosemu2-2.0nb20171102, Kamil Rytarowski
• Update fswatch to 1.11.2., Filip Hajny
• libpwquality: move away from fedorahosted., coypu
• mlocate: homepage and mastersites fedorahosted->pa, coypu