py-macs2: Successful build

[Jason Bacon <bacon4000%gmail.com@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon4000%gmail.com@localhost>
Pushed By:	outpaddling
Date:		Thu Nov 2 10:45:22 2017 -0500
Changeset:	0257d5c8a58d9c6181a3b9365778b56f8a239dfb

Modified Files:
	py-macs2/Makefile
	py-macs2/PLIST

Log Message:
py-macs2: Successful build

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=0257d5c8a58d9c6181a3b9365778b56f8a239dfb

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 py-macs2/Makefile |  9 ++----
 py-macs2/PLIST    | 83 +++++++++++++++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 85 insertions(+), 7 deletions(-)

diffs:
diff --git a/py-macs2/Makefile b/py-macs2/Makefile
index 8e94779d93..03e5bced58 100644
--- a/py-macs2/Makefile
+++ b/py-macs2/Makefile
@@ -15,7 +15,7 @@
 
 DISTNAME=	macs2-${PORTVERSION}
 PKGNAME=	${PYPKGPREFIX}-macs2-${PORTVERSION}
-CATEGORIES=	wip
+CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=taoliu/}
 GITHUB_PROJECT=	MACS
 GITHUB_TAG=	6946b2f6571cd0a7cfbb882c79aaa25a05a5c48d
@@ -38,13 +38,8 @@ PORTVERSION=	2017.05.05
 post-patch:
 	${MV} -f ${WRKSRC}/setup_w_cython.py ${WRKSRC}/setup.py
 
-# Verify that we shouldn't use egg.mk or extensions.mk instead.
-.include "../../lang/python/distutils.mk"
+.include "../../lang/python/egg.mk"
 .include "../../math/py-numpy/buildlink3.mk"
 .include "../../math/blas/buildlink3.mk"
 .include "../../devel/py-cython/buildlink3.mk"
-# Based on USES=python.  Check this.
-.include "../../lang/python/application.mk"
-# Linux doesn't have zlib in the base, so just in case...
-# .include "../../devel/zlib/buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"
diff --git a/py-macs2/PLIST b/py-macs2/PLIST
index 48d96a5493..dff868c3f2 100644
--- a/py-macs2/PLIST
+++ b/py-macs2/PLIST
@@ -1 +1,84 @@
 @comment $NetBSD$
+bin/macs2
+${PYSITELIB}/MACS2-2.1.1.20160309-py${PYVERSSUFFIX}.egg-info/PKG-INFO
+${PYSITELIB}/MACS2-2.1.1.20160309-py${PYVERSSUFFIX}.egg-info/SOURCES.txt
+${PYSITELIB}/MACS2-2.1.1.20160309-py${PYVERSSUFFIX}.egg-info/dependency_links.txt
+${PYSITELIB}/MACS2-2.1.1.20160309-py${PYVERSSUFFIX}.egg-info/requires.txt
+${PYSITELIB}/MACS2-2.1.1.20160309-py${PYVERSSUFFIX}.egg-info/top_level.txt
+${PYSITELIB}/MACS2/Constants.py
+${PYSITELIB}/MACS2/Constants.pyc
+${PYSITELIB}/MACS2/Constants.pyo
+${PYSITELIB}/MACS2/IO/BedGraph.so
+${PYSITELIB}/MACS2/IO/BedGraphIO.so
+${PYSITELIB}/MACS2/IO/BinKeeper.py
+${PYSITELIB}/MACS2/IO/BinKeeper.pyc
+${PYSITELIB}/MACS2/IO/BinKeeper.pyo
+${PYSITELIB}/MACS2/IO/CallPeakUnit.so
+${PYSITELIB}/MACS2/IO/FixWidthTrack.so
+${PYSITELIB}/MACS2/IO/PairedEndTrack.so
+${PYSITELIB}/MACS2/IO/Parser.so
+${PYSITELIB}/MACS2/IO/PeakIO.so
+${PYSITELIB}/MACS2/IO/ScoreTrack.so
+${PYSITELIB}/MACS2/IO/__init__.py
+${PYSITELIB}/MACS2/IO/__init__.pyc
+${PYSITELIB}/MACS2/IO/__init__.pyo
+${PYSITELIB}/MACS2/OptValidator.py
+${PYSITELIB}/MACS2/OptValidator.pyc
+${PYSITELIB}/MACS2/OptValidator.pyo
+${PYSITELIB}/MACS2/OutputWriter.py
+${PYSITELIB}/MACS2/OutputWriter.pyc
+${PYSITELIB}/MACS2/OutputWriter.pyo
+${PYSITELIB}/MACS2/PeakDetect.so
+${PYSITELIB}/MACS2/PeakModel.so
+${PYSITELIB}/MACS2/Pileup.so
+${PYSITELIB}/MACS2/Prob.so
+${PYSITELIB}/MACS2/Signal.so
+${PYSITELIB}/MACS2/Statistics.so
+${PYSITELIB}/MACS2/__init__.py
+${PYSITELIB}/MACS2/__init__.pyc
+${PYSITELIB}/MACS2/__init__.pyo
+${PYSITELIB}/MACS2/bdgbroadcall_cmd.py
+${PYSITELIB}/MACS2/bdgbroadcall_cmd.pyc
+${PYSITELIB}/MACS2/bdgbroadcall_cmd.pyo
+${PYSITELIB}/MACS2/bdgcmp_cmd.py
+${PYSITELIB}/MACS2/bdgcmp_cmd.pyc
+${PYSITELIB}/MACS2/bdgcmp_cmd.pyo
+${PYSITELIB}/MACS2/bdgdiff_cmd.py
+${PYSITELIB}/MACS2/bdgdiff_cmd.pyc
+${PYSITELIB}/MACS2/bdgdiff_cmd.pyo
+${PYSITELIB}/MACS2/bdgopt_cmd.py
+${PYSITELIB}/MACS2/bdgopt_cmd.pyc
+${PYSITELIB}/MACS2/bdgopt_cmd.pyo
+${PYSITELIB}/MACS2/bdgpeakcall_cmd.py
+${PYSITELIB}/MACS2/bdgpeakcall_cmd.pyc
+${PYSITELIB}/MACS2/bdgpeakcall_cmd.pyo
+${PYSITELIB}/MACS2/callpeak_cmd.py
+${PYSITELIB}/MACS2/callpeak_cmd.pyc
+${PYSITELIB}/MACS2/callpeak_cmd.pyo
+${PYSITELIB}/MACS2/cmbreps_cmd.py
+${PYSITELIB}/MACS2/cmbreps_cmd.pyc
+${PYSITELIB}/MACS2/cmbreps_cmd.pyo
+${PYSITELIB}/MACS2/data/__init__.py
+${PYSITELIB}/MACS2/data/__init__.pyc
+${PYSITELIB}/MACS2/data/__init__.pyo
+${PYSITELIB}/MACS2/data/g0.01.dat
+${PYSITELIB}/MACS2/data/g0.05.dat
+${PYSITELIB}/MACS2/diffpeak_cmd.py
+${PYSITELIB}/MACS2/diffpeak_cmd.pyc
+${PYSITELIB}/MACS2/diffpeak_cmd.pyo
+${PYSITELIB}/MACS2/filterdup_cmd.py
+${PYSITELIB}/MACS2/filterdup_cmd.pyc
+${PYSITELIB}/MACS2/filterdup_cmd.pyo
+${PYSITELIB}/MACS2/hashtable.so
+${PYSITELIB}/MACS2/pileup_cmd.py
+${PYSITELIB}/MACS2/pileup_cmd.pyc
+${PYSITELIB}/MACS2/pileup_cmd.pyo
+${PYSITELIB}/MACS2/predictd_cmd.py
+${PYSITELIB}/MACS2/predictd_cmd.pyc
+${PYSITELIB}/MACS2/predictd_cmd.pyo
+${PYSITELIB}/MACS2/randsample_cmd.py
+${PYSITELIB}/MACS2/randsample_cmd.pyc
+${PYSITELIB}/MACS2/randsample_cmd.pyo
+${PYSITELIB}/MACS2/refinepeak_cmd.py
+${PYSITELIB}/MACS2/refinepeak_cmd.pyc
+${PYSITELIB}/MACS2/refinepeak_cmd.pyo