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Re: Please review wip/bwa



On Wed, 16 Sep 2015 09:36:38 -0500
Jason Bacon <jwbacon%tds.net@localhost> wrote:

> This is the first in a long series of genomics packages I've developed 
> and plan to submit.

Nice! We do need more people working on scientific software.

> pkglint -e runs clean, but I'm inviting some ruthlessly critical 
> feedback on this one so that future packages will require minimal tampering.

- You need to use REPLACE_PERL (hint: set PKG_DEVELOPER=yes)
- Homepage URL in DESCR is redundant (pkg_info will display HOMEPAGE)
- HOMEPAGE should not have /../
- "USE_LANGUAGES=c" is the default and can be omitted
- I think(?) we recommend using INSTALLATION_DIRS instead of AUTO_MKDIRS

Also, for extra ruthless mode you can try pkglint -Wall.

-Tobias

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