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py-dnaio: Read and write FASTQ and FASTA



Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Thu Oct 10 15:18:54 2019 -0500
Changeset:	af13c2158ae766d553de518a989e04cf065d6493

Added Files:
	py-dnaio/DESCR
	py-dnaio/Makefile
	py-dnaio/PLIST
	py-dnaio/distinfo

Log Message:
py-dnaio: Read and write FASTQ and FASTA

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=af13c2158ae766d553de518a989e04cf065d6493

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 py-dnaio/DESCR    |  3 +++
 py-dnaio/Makefile | 33 +++++++++++++++++++++++++++++++++
 py-dnaio/PLIST    | 28 ++++++++++++++++++++++++++++
 py-dnaio/distinfo |  6 ++++++
 4 files changed, 70 insertions(+)

diffs:
diff --git a/py-dnaio/DESCR b/py-dnaio/DESCR
new file mode 100644
index 0000000000..62eb02234b
--- /dev/null
+++ b/py-dnaio/DESCR
@@ -0,0 +1,3 @@
+dnaio is a Python 3 library for fast parsing of FASTQ and also FASTA files. The
+code was previously part of the cutadapt tool and has been improved since it
+has been split out.
diff --git a/py-dnaio/Makefile b/py-dnaio/Makefile
new file mode 100644
index 0000000000..f2cb7aaf07
--- /dev/null
+++ b/py-dnaio/Makefile
@@ -0,0 +1,33 @@
+# $NetBSD$
+#
+###########################################################
+#                  Generated by fbsd2pkg                  #
+#              Thu Oct 10 15:09:51 CDT 2019               #
+###########################################################
+
+DISTNAME=	dnaio-${PV}
+PKGNAME=	${PYPKGPREFIX}-dnaio-${PV}
+CATEGORIES=	biology
+MASTER_SITES=	${MASTER_SITE_PYPI:=d/dnaio/}
+
+MAINTAINER=	bacon%NetBSD.org@localhost
+HOMEPAGE=	https://pypi.python.org/pypi/dnaio
+COMMENT=	Read and write FASTQ and FASTA
+# Check this
+LICENSE=	mit
+
+# Test and change if necessary.
+# MAKE_JOBS_SAFE=	no
+
+# Just assuming C and C++: Adjust this!
+USE_LANGUAGES=	c
+
+PV=		0.4
+
+# Verify that we shouldn't use distutils.mk or extensions.mk instead.
+.include "../../lang/python/egg.mk"
+# Based on USES=python.  Check this.
+.include "../../lang/python/application.mk"
+# CentOS doesn't have zlib in the base, so uncomment if needed.
+# .include "../../devel/zlib/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/py-dnaio/PLIST b/py-dnaio/PLIST
new file mode 100644
index 0000000000..3eb9f5f9eb
--- /dev/null
+++ b/py-dnaio/PLIST
@@ -0,0 +1,28 @@
+@comment $NetBSD$
+${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
+${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
+${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
+${PYSITELIB}/${EGG_INFODIR}/requires.txt
+${PYSITELIB}/${EGG_INFODIR}/top_level.txt
+${PYSITELIB}/dnaio/__init__.py
+${PYSITELIB}/dnaio/__init__.pyo
+${PYSITELIB}/dnaio/__init__.pyc
+${PYSITELIB}/dnaio/_util.pyo
+${PYSITELIB}/dnaio/_util.pyc
+${PYSITELIB}/dnaio/_version.pyo
+${PYSITELIB}/dnaio/_version.pyc
+${PYSITELIB}/dnaio/chunks.pyo
+${PYSITELIB}/dnaio/chunks.pyc
+${PYSITELIB}/dnaio/exceptions.pyo
+${PYSITELIB}/dnaio/exceptions.pyc
+${PYSITELIB}/dnaio/readers.pyo
+${PYSITELIB}/dnaio/readers.pyc
+${PYSITELIB}/dnaio/writers.pyo
+${PYSITELIB}/dnaio/writers.pyc
+${PYSITELIB}/dnaio/_core.so
+${PYSITELIB}/dnaio/_util.py
+${PYSITELIB}/dnaio/_version.py
+${PYSITELIB}/dnaio/chunks.py
+${PYSITELIB}/dnaio/exceptions.py
+${PYSITELIB}/dnaio/readers.py
+${PYSITELIB}/dnaio/writers.py
diff --git a/py-dnaio/distinfo b/py-dnaio/distinfo
new file mode 100644
index 0000000000..76394fb855
--- /dev/null
+++ b/py-dnaio/distinfo
@@ -0,0 +1,6 @@
+$NetBSD$
+
+SHA1 (dnaio-0.4.tar.gz) = f4073d7a3f032dbfaaf3bb05d94a68c2a6886118
+RMD160 (dnaio-0.4.tar.gz) = 5ae69f8146d86595a09714affe4d8d8cc75614a5
+SHA512 (dnaio-0.4.tar.gz) = e6491ceab5c810cfb06f807ac24cfe95f963323002344d37a17f6c60669139469c7a6ca4ddaf19dc37c3a20c7eea9bcd80c2fcfb6378ee4f1acd5540b032b084
+Size (dnaio-0.4.tar.gz) = 123137 bytes


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