CVS commit: pkgsrc/biology/ncbi-blast+

["Roland Illig" <rillig%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   rillig
Date:           Mon May 25 05:19:07 UTC 2020

Modified Files:
        pkgsrc/biology/ncbi-blast+: Makefile

Log Message:
biology/ncbi-blast+: document possible array[char] bug


To generate a diff of this commit:
cvs rdiff -u -r1.15 -r1.16 pkgsrc/biology/ncbi-blast+/Makefile

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/ncbi-blast+/Makefile
diff -u pkgsrc/biology/ncbi-blast+/Makefile:1.15 pkgsrc/biology/ncbi-blast+/Makefile:1.16
--- pkgsrc/biology/ncbi-blast+/Makefile:1.15    Fri May 22 10:55:57 2020
+++ pkgsrc/biology/ncbi-blast+/Makefile Mon May 25 05:19:06 2020
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.15 2020/05/22 10:55:57 adam Exp $
+# $NetBSD: Makefile,v 1.16 2020/05/25 05:19:06 rillig Exp $
 
 DISTNAME=      ncbi-blast-2.8.1+-src
 PKGNAME=       ${DISTNAME:S/+-src//:S/blast/blast+/}
@@ -46,6 +46,12 @@ WRKSRC=                      ${WRKDIR}/${DISTNAME}/c++
 CONFIGURE_ENV+=                ac_cv_func_statfs=no
 .endif
 
+# c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()':
+# c++/src/objtools/edit/seq_entry_edit.cpp:172:44: error: array subscript has type 'char' [-Werror=char-subscripts]
+#              while (descr_insert_order[index] != 0)
+# Maybe fix this later.
+BUILDLINK_TRANSFORM+=  rm:-Werror=char-subscripts
+
 post-install:
        ${RM} ${DESTDIR}${PREFIX}/include/ncbi-tools++/*/*/.cvsignore.extra
        ${STRIP} ${DESTDIR}${PREFIX}/lib/ncbi-tools++/*.so