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[pkgsrc/trunk]: pkgsrc/math/py-scipy SciPy 0.19.0 is the culmination of 7 mon...
details: https://anonhg.NetBSD.org/pkgsrc/rev/40e71da123cf
branches: trunk
changeset: 359614:40e71da123cf
user: adam <adam%pkgsrc.org@localhost>
date: Mon Mar 13 19:42:22 2017 +0000
description:
SciPy 0.19.0 is the culmination of 7 months of hard work. It contains
many new features, numerous bug-fixes, improved test coverage and
better documentation. There have been a number of deprecations and
API changes in this release, which are documented below. All users
are encouraged to upgrade to this release, as there are a large number
of bug-fixes and optimizations. Moreover, our development attention
will now shift to bug-fix releases on the 0.19.x branch, and on adding
new features on the master branch.
diffstat:
math/py-scipy/Makefile | 7 +-
math/py-scipy/PLIST | 395 ++++++++----------------------------------------
math/py-scipy/distinfo | 10 +-
3 files changed, 81 insertions(+), 331 deletions(-)
diffs (truncated from 643 to 300 lines):
diff -r 57a2942d300a -r 40e71da123cf math/py-scipy/Makefile
--- a/math/py-scipy/Makefile Mon Mar 13 16:43:00 2017 +0000
+++ b/math/py-scipy/Makefile Mon Mar 13 19:42:22 2017 +0000
@@ -1,9 +1,10 @@
-# $NetBSD: Makefile,v 1.23 2017/01/25 19:48:50 adam Exp $
+# $NetBSD: Makefile,v 1.24 2017/03/13 19:42:22 adam Exp $
-DISTNAME= scipy-0.18.1
+DISTNAME= scipy-0.19.0
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
CATEGORIES= math python
MASTER_SITES= ${MASTER_SITE_PYPI:=s/scipy/}
+EXTRACT_SUFX= .zip
MAINTAINER= markd%NetBSD.org@localhost
HOMEPAGE= http://www.scipy.org/
@@ -115,6 +116,6 @@
.include "../../lang/python/distutils.mk"
.include "../../devel/py-cython/buildlink3.mk"
.include "../../math/fftw/buildlink3.mk"
-BUILDLINK_API_DEPENDS.py-numpy+= ${PYPKGPREFIX}-numpy>=1.7.1
+BUILDLINK_API_DEPENDS.py-numpy+= ${PYPKGPREFIX}-numpy>=1.8.2
.include "../../math/py-numpy/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"
diff -r 57a2942d300a -r 40e71da123cf math/py-scipy/PLIST
--- a/math/py-scipy/PLIST Mon Mar 13 16:43:00 2017 +0000
+++ b/math/py-scipy/PLIST Mon Mar 13 19:42:22 2017 +0000
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.10 2016/08/19 10:54:12 wiz Exp $
+@comment $NetBSD: PLIST,v 1.11 2017/03/13 19:42:22 adam Exp $
${PYSITELIB}/${EGG_FILE}/PKG-INFO
${PYSITELIB}/${EGG_FILE}/SOURCES.txt
${PYSITELIB}/${EGG_FILE}/dependency_links.txt
@@ -23,12 +23,17 @@
${PYSITELIB}/scipy/_lib/__init__.py
${PYSITELIB}/scipy/_lib/__init__.pyc
${PYSITELIB}/scipy/_lib/__init__.pyo
+${PYSITELIB}/scipy/_lib/_ccallback.py
+${PYSITELIB}/scipy/_lib/_ccallback.pyc
+${PYSITELIB}/scipy/_lib/_ccallback.pyo
+${PYSITELIB}/scipy/_lib/_ccallback_c.so
${PYSITELIB}/scipy/_lib/_gcutils.py
${PYSITELIB}/scipy/_lib/_gcutils.pyc
${PYSITELIB}/scipy/_lib/_gcutils.pyo
${PYSITELIB}/scipy/_lib/_numpy_compat.py
${PYSITELIB}/scipy/_lib/_numpy_compat.pyc
${PYSITELIB}/scipy/_lib/_numpy_compat.pyo
+${PYSITELIB}/scipy/_lib/_test_ccallback.so
${PYSITELIB}/scipy/_lib/_testutils.py
${PYSITELIB}/scipy/_lib/_testutils.pyc
${PYSITELIB}/scipy/_lib/_testutils.pyo
@@ -57,6 +62,7 @@
${PYSITELIB}/scipy/_lib/tests/test__threadsafety.py
${PYSITELIB}/scipy/_lib/tests/test__util.py
${PYSITELIB}/scipy/_lib/tests/test__version.py
+${PYSITELIB}/scipy/_lib/tests/test_ccallback.py
${PYSITELIB}/scipy/_lib/tests/test_tmpdirs.py
${PYSITELIB}/scipy/cluster/__init__.py
${PYSITELIB}/scipy/cluster/__init__.pyc
@@ -164,11 +170,21 @@
${PYSITELIB}/scipy/interpolate/__init__.py
${PYSITELIB}/scipy/interpolate/__init__.pyc
${PYSITELIB}/scipy/interpolate/__init__.pyo
+${PYSITELIB}/scipy/interpolate/_bspl.so
+${PYSITELIB}/scipy/interpolate/_bsplines.py
+${PYSITELIB}/scipy/interpolate/_bsplines.pyc
+${PYSITELIB}/scipy/interpolate/_bsplines.pyo
${PYSITELIB}/scipy/interpolate/_cubic.py
${PYSITELIB}/scipy/interpolate/_cubic.pyc
${PYSITELIB}/scipy/interpolate/_cubic.pyo
${PYSITELIB}/scipy/interpolate/_fitpack.so
+${PYSITELIB}/scipy/interpolate/_fitpack_impl.py
+${PYSITELIB}/scipy/interpolate/_fitpack_impl.pyc
+${PYSITELIB}/scipy/interpolate/_fitpack_impl.pyo
${PYSITELIB}/scipy/interpolate/_interpolate.so
+${PYSITELIB}/scipy/interpolate/_pade.py
+${PYSITELIB}/scipy/interpolate/_pade.pyc
+${PYSITELIB}/scipy/interpolate/_pade.pyo
${PYSITELIB}/scipy/interpolate/_ppoly.so
${PYSITELIB}/scipy/interpolate/dfitpack.so
${PYSITELIB}/scipy/interpolate/fitpack.py
@@ -201,6 +217,7 @@
${PYSITELIB}/scipy/interpolate/setup.pyo
${PYSITELIB}/scipy/interpolate/tests/data/bug-1310.npz
${PYSITELIB}/scipy/interpolate/tests/data/estimate_gradients_hang.npy
+${PYSITELIB}/scipy/interpolate/tests/test_bsplines.py
${PYSITELIB}/scipy/interpolate/tests/test_fitpack.py
${PYSITELIB}/scipy/interpolate/tests/test_fitpack2.py
${PYSITELIB}/scipy/interpolate/tests/test_gil.py
@@ -208,6 +225,7 @@
${PYSITELIB}/scipy/interpolate/tests/test_interpolate.py
${PYSITELIB}/scipy/interpolate/tests/test_interpolate_wrapper.py
${PYSITELIB}/scipy/interpolate/tests/test_ndgriddata.py
+${PYSITELIB}/scipy/interpolate/tests/test_pade.py
${PYSITELIB}/scipy/interpolate/tests/test_polyint.py
${PYSITELIB}/scipy/interpolate/tests/test_rbf.py
${PYSITELIB}/scipy/interpolate/tests/test_regression.py
@@ -476,6 +494,8 @@
${PYSITELIB}/scipy/io/tests/data/struct_scalars_replicated_3d.sav
${PYSITELIB}/scipy/io/tests/data/test-44100Hz-2ch-32bit-float-be.wav
${PYSITELIB}/scipy/io/tests/data/test-44100Hz-2ch-32bit-float-le.wav
+${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-early-eof.wav
+${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-incomplete-chunk.wav
${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes.wav
${PYSITELIB}/scipy/io/tests/data/test-48000Hz-2ch-64bit-float-le-wavex.wav
${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-2ch-1byteu.wav
@@ -587,6 +607,12 @@
${PYSITELIB}/scipy/linalg/special_matrices.py
${PYSITELIB}/scipy/linalg/special_matrices.pyc
${PYSITELIB}/scipy/linalg/special_matrices.pyo
+${PYSITELIB}/scipy/linalg/tests/data/carex_15_data.npz
+${PYSITELIB}/scipy/linalg/tests/data/carex_18_data.npz
+${PYSITELIB}/scipy/linalg/tests/data/carex_19_data.npz
+${PYSITELIB}/scipy/linalg/tests/data/carex_20_data.npz
+${PYSITELIB}/scipy/linalg/tests/data/carex_6_data.npz
+${PYSITELIB}/scipy/linalg/tests/data/gendare_20170120_data.npz
${PYSITELIB}/scipy/linalg/tests/test_basic.py
${PYSITELIB}/scipy/linalg/tests/test_blas.py
${PYSITELIB}/scipy/linalg/tests/test_build.py
@@ -652,6 +678,9 @@
${PYSITELIB}/scipy/ndimage/__init__.py
${PYSITELIB}/scipy/ndimage/__init__.pyc
${PYSITELIB}/scipy/ndimage/__init__.pyo
+${PYSITELIB}/scipy/ndimage/_ctest.so
+${PYSITELIB}/scipy/ndimage/_ctest_oldapi.so
+${PYSITELIB}/scipy/ndimage/_cytest.so
${PYSITELIB}/scipy/ndimage/_nd_image.so
${PYSITELIB}/scipy/ndimage/_ni_label.so
${PYSITELIB}/scipy/ndimage/_ni_support.py
@@ -683,6 +712,7 @@
${PYSITELIB}/scipy/ndimage/tests/data/label_results.txt
${PYSITELIB}/scipy/ndimage/tests/data/label_strels.txt
${PYSITELIB}/scipy/ndimage/tests/dots.png
+${PYSITELIB}/scipy/ndimage/tests/test_c_api.py
${PYSITELIB}/scipy/ndimage/tests/test_datatypes.py
${PYSITELIB}/scipy/ndimage/tests/test_filters.py
${PYSITELIB}/scipy/ndimage/tests/test_io.py
@@ -887,6 +917,7 @@
${PYSITELIB}/scipy/signal/spectral.pyc
${PYSITELIB}/scipy/signal/spectral.pyo
${PYSITELIB}/scipy/signal/spline.so
+${PYSITELIB}/scipy/signal/tests/mpsig.py
${PYSITELIB}/scipy/signal/tests/test_array_tools.py
${PYSITELIB}/scipy/signal/tests/test_cont2discrete.py
${PYSITELIB}/scipy/signal/tests/test_dltisys.py
@@ -915,6 +946,9 @@
${PYSITELIB}/scipy/sparse/__init__.pyc
${PYSITELIB}/scipy/sparse/__init__.pyo
${PYSITELIB}/scipy/sparse/_csparsetools.so
+${PYSITELIB}/scipy/sparse/_matrix_io.py
+${PYSITELIB}/scipy/sparse/_matrix_io.pyc
+${PYSITELIB}/scipy/sparse/_matrix_io.pyo
${PYSITELIB}/scipy/sparse/_sparsetools.so
${PYSITELIB}/scipy/sparse/base.py
${PYSITELIB}/scipy/sparse/base.pyc
@@ -1098,6 +1132,7 @@
${PYSITELIB}/scipy/sparse/tests/test_csc.py
${PYSITELIB}/scipy/sparse/tests/test_csr.py
${PYSITELIB}/scipy/sparse/tests/test_extract.py
+${PYSITELIB}/scipy/sparse/tests/test_matrix_io.py
${PYSITELIB}/scipy/sparse/tests/test_sparsetools.py
${PYSITELIB}/scipy/sparse/tests/test_spfuncs.py
${PYSITELIB}/scipy/sparse/tests/test_sputils.py
@@ -1105,6 +1140,7 @@
${PYSITELIB}/scipy/spatial/__init__.pyc
${PYSITELIB}/scipy/spatial/__init__.pyo
${PYSITELIB}/scipy/spatial/_distance_wrap.so
+${PYSITELIB}/scipy/spatial/_hausdorff.so
${PYSITELIB}/scipy/spatial/_plotutils.py
${PYSITELIB}/scipy/spatial/_plotutils.pyc
${PYSITELIB}/scipy/spatial/_plotutils.pyo
@@ -1114,6 +1150,7 @@
${PYSITELIB}/scipy/spatial/_spherical_voronoi.py
${PYSITELIB}/scipy/spatial/_spherical_voronoi.pyc
${PYSITELIB}/scipy/spatial/_spherical_voronoi.pyo
+${PYSITELIB}/scipy/spatial/_voronoi.so
${PYSITELIB}/scipy/spatial/ckdtree.so
${PYSITELIB}/scipy/spatial/distance.py
${PYSITELIB}/scipy/spatial/distance.pyc
@@ -1130,8 +1167,8 @@
${PYSITELIB}/scipy/spatial/tests/data/degenerate_pointset.npz
${PYSITELIB}/scipy/spatial/tests/data/iris.txt
${PYSITELIB}/scipy/spatial/tests/data/pdist-boolean-inp.txt
-${PYSITELIB}/scipy/spatial/tests/data/pdist-chebychev-ml-iris.txt
-${PYSITELIB}/scipy/spatial/tests/data/pdist-chebychev-ml.txt
+${PYSITELIB}/scipy/spatial/tests/data/pdist-chebyshev-ml-iris.txt
+${PYSITELIB}/scipy/spatial/tests/data/pdist-chebyshev-ml.txt
${PYSITELIB}/scipy/spatial/tests/data/pdist-cityblock-ml-iris.txt
${PYSITELIB}/scipy/spatial/tests/data/pdist-cityblock-ml.txt
${PYSITELIB}/scipy/spatial/tests/data/pdist-correlation-ml-iris.txt
@@ -1150,12 +1187,18 @@
${PYSITELIB}/scipy/spatial/tests/data/pdist-seuclidean-ml.txt
${PYSITELIB}/scipy/spatial/tests/data/pdist-spearman-ml.txt
${PYSITELIB}/scipy/spatial/tests/data/random-bool-data.txt
+${PYSITELIB}/scipy/spatial/tests/data/random-double-data.txt
+${PYSITELIB}/scipy/spatial/tests/data/random-int-data.txt
+${PYSITELIB}/scipy/spatial/tests/data/random-uint-data.txt
+${PYSITELIB}/scipy/spatial/tests/data/selfdual-4d-polytope.txt
${PYSITELIB}/scipy/spatial/tests/test__plotutils.py
${PYSITELIB}/scipy/spatial/tests/test__procrustes.py
${PYSITELIB}/scipy/spatial/tests/test_distance.py
+${PYSITELIB}/scipy/spatial/tests/test_hausdorff.py
${PYSITELIB}/scipy/spatial/tests/test_kdtree.py
${PYSITELIB}/scipy/spatial/tests/test_qhull.py
${PYSITELIB}/scipy/spatial/tests/test_spherical_voronoi.py
+${PYSITELIB}/scipy/special.pxd
${PYSITELIB}/scipy/special/__init__.py
${PYSITELIB}/scipy/special/__init__.pyc
${PYSITELIB}/scipy/special/__init__.pyo
@@ -1164,18 +1207,27 @@
${PYSITELIB}/scipy/special/_ellip_harm.pyc
${PYSITELIB}/scipy/special/_ellip_harm.pyo
${PYSITELIB}/scipy/special/_ellip_harm_2.so
+${PYSITELIB}/scipy/special/_logsumexp.py
+${PYSITELIB}/scipy/special/_logsumexp.pyc
+${PYSITELIB}/scipy/special/_logsumexp.pyo
${PYSITELIB}/scipy/special/_mptestutils.py
${PYSITELIB}/scipy/special/_mptestutils.pyc
${PYSITELIB}/scipy/special/_mptestutils.pyo
${PYSITELIB}/scipy/special/_precompute/__init__.py
${PYSITELIB}/scipy/special/_precompute/__init__.pyc
${PYSITELIB}/scipy/special/_precompute/__init__.pyo
+${PYSITELIB}/scipy/special/_precompute/expn_asy.py
+${PYSITELIB}/scipy/special/_precompute/expn_asy.pyc
+${PYSITELIB}/scipy/special/_precompute/expn_asy.pyo
${PYSITELIB}/scipy/special/_precompute/gammainc_asy.py
${PYSITELIB}/scipy/special/_precompute/gammainc_asy.pyc
${PYSITELIB}/scipy/special/_precompute/gammainc_asy.pyo
${PYSITELIB}/scipy/special/_precompute/gammainc_data.py
${PYSITELIB}/scipy/special/_precompute/gammainc_data.pyc
${PYSITELIB}/scipy/special/_precompute/gammainc_data.pyo
+${PYSITELIB}/scipy/special/_precompute/loggamma.py
+${PYSITELIB}/scipy/special/_precompute/loggamma.pyc
+${PYSITELIB}/scipy/special/_precompute/loggamma.pyo
${PYSITELIB}/scipy/special/_precompute/setup.py
${PYSITELIB}/scipy/special/_precompute/setup.pyc
${PYSITELIB}/scipy/special/_precompute/setup.pyo
@@ -1185,6 +1237,7 @@
${PYSITELIB}/scipy/special/_spherical_bessel.py
${PYSITELIB}/scipy/special/_spherical_bessel.pyc
${PYSITELIB}/scipy/special/_spherical_bessel.pyo
+${PYSITELIB}/scipy/special/_test_round.so
${PYSITELIB}/scipy/special/_testutils.py
${PYSITELIB}/scipy/special/_testutils.pyc
${PYSITELIB}/scipy/special/_testutils.pyo
@@ -1196,6 +1249,8 @@
${PYSITELIB}/scipy/special/basic.py
${PYSITELIB}/scipy/special/basic.pyc
${PYSITELIB}/scipy/special/basic.pyo
+${PYSITELIB}/scipy/special/cython_special.pxd
+${PYSITELIB}/scipy/special/cython_special.so
${PYSITELIB}/scipy/special/generate_ufuncs.py
${PYSITELIB}/scipy/special/generate_ufuncs.pyc
${PYSITELIB}/scipy/special/generate_ufuncs.pyo
@@ -1208,6 +1263,9 @@
${PYSITELIB}/scipy/special/setup.py
${PYSITELIB}/scipy/special/setup.pyc
${PYSITELIB}/scipy/special/setup.pyo
+${PYSITELIB}/scipy/special/sf_error.py
+${PYSITELIB}/scipy/special/sf_error.pyc
+${PYSITELIB}/scipy/special/sf_error.pyo
${PYSITELIB}/scipy/special/specfun.so
${PYSITELIB}/scipy/special/spfun_stats.py
${PYSITELIB}/scipy/special/spfun_stats.pyc
@@ -1218,6 +1276,8 @@
${PYSITELIB}/scipy/special/tests/data/local.npz
${PYSITELIB}/scipy/special/tests/test_basic.py
${PYSITELIB}/scipy/special/tests/test_boxcox.py
+${PYSITELIB}/scipy/special/tests/test_cdflib.py
+${PYSITELIB}/scipy/special/tests/test_cython_special.py
${PYSITELIB}/scipy/special/tests/test_data.py
${PYSITELIB}/scipy/special/tests/test_digamma.py
${PYSITELIB}/scipy/special/tests/test_ellip_harm.py
@@ -1225,14 +1285,22 @@
${PYSITELIB}/scipy/special/tests/test_lambertw.py
${PYSITELIB}/scipy/special/tests/test_loggamma.py
${PYSITELIB}/scipy/special/tests/test_logit.py
+${PYSITELIB}/scipy/special/tests/test_logsumexp.py
${PYSITELIB}/scipy/special/tests/test_mpmath.py
${PYSITELIB}/scipy/special/tests/test_orthogonal.py
${PYSITELIB}/scipy/special/tests/test_orthogonal_eval.py
+${PYSITELIB}/scipy/special/tests/test_precompute_expn_asy.py
${PYSITELIB}/scipy/special/tests/test_precompute_gammainc.py
${PYSITELIB}/scipy/special/tests/test_precompute_utils.py
+${PYSITELIB}/scipy/special/tests/test_round.py
+${PYSITELIB}/scipy/special/tests/test_sf_error.py
+${PYSITELIB}/scipy/special/tests/test_sici.py
${PYSITELIB}/scipy/special/tests/test_spence.py
${PYSITELIB}/scipy/special/tests/test_spfun_stats.py
+${PYSITELIB}/scipy/special/tests/test_sph_harm.py
${PYSITELIB}/scipy/special/tests/test_spherical_bessel.py
+${PYSITELIB}/scipy/special/tests/test_trig.py
+${PYSITELIB}/scipy/special/tests/test_wrightomega.py
${PYSITELIB}/scipy/stats/__init__.py
${PYSITELIB}/scipy/stats/__init__.pyc
${PYSITELIB}/scipy/stats/__init__.pyo
@@ -1310,6 +1378,7 @@
${PYSITELIB}/scipy/stats/tests/test_contingency.py
${PYSITELIB}/scipy/stats/tests/test_continuous_basic.py
${PYSITELIB}/scipy/stats/tests/test_discrete_basic.py
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