[pkgsrc/trunk]: pkgsrc/geography/py-obspy Update to 1.0.3

To: pkgsrc-changes-hg%NetBSD.org@localhost
Subject: [pkgsrc/trunk]: pkgsrc/geography/py-obspy Update to 1.0.3
From: wen <wen%pkgsrc.org@localhost>
Date: Wed, 15 Jan 2020 06:47:43 +0000
details:   https://anonhg.NetBSD.org/pkgsrc/rev/e49a0f40161f
branches:  trunk
changeset: 359234:e49a0f40161f
user:      wen <wen%pkgsrc.org@localhost>
date:      Sat Mar 04 11:05:35 2017 +0000

description:
Update to 1.0.3

Upstream changes:
1.0.3: (doi: 10.5281/zenodo.165134)
 - obspy.core:
   * properly pass through kwargs specified for Trace.plot() down to the
     low-level plotting routines (e.g. events were not shown properly in
     dayplot of a trace, see #1566)
   * properly pass through kwargs from Stream.detrend() to Trace.detrend()
     (see #1607)
   * Correctly splitting masked arrays in Trace objects for a couple of corner
     cases (see #1650, #1653).
 - obspy.core.event.source:
   * Fix `farfield` if input `points` is a 2D array. (see #1499, #1553)
 - obspy.clients.earthworm:
   * Better end of stream detection. (see #1605)
   * More efficient unpacking of server response. (see #1680)
 - obspy.clients.neic:
   * Better end of stream detection. (see #1563)
 - obspy.clients.seedlink:
   * Better end of stream detection. (see #1605)
 - obspy.clients.seishub:
   * Fix wrong kwargs `first_pick` and `last_pick` in
     `Client.event.get_list()`. (see #1661)
 - obspy.io.mseed:
   * ObsPy can now also read (Mini)SEED files with noise records. (see #1495)
   * ObsPy can now read records with a data-offset of zero. (see #1509, #1525)
   * ObsPy can now read MiniSEED files with micro-second wrap arounds.
     (see #1531)
   * ObsPy can now read MiniSEED files with no blockette 1000. (see #1544)
   * ObsPy now always writes Blockette 100 if sampling rate accuracy is
     otherwise lost. (see #1550)
   * obspy.io.mseed.util.set_flags_in_fixed_header() now works with Python 3
     and also for files with Blockette 100 (see #1648).
 - obspy.io.quakeml:
   * write StationMagnitude.residual even when it is zero (see #1625)
   * read & write Event.region
 - obspy.io.sac:
   * `SACTrace.lpspol` and `lcalda` are `True` and `False` by default, when
      created via `SACTrace.from_obspy_trace` with a `Trace` that has no SAC
      inheritance. (see #1507)
   * Reference time not written to SAC file when made from scratch
     (see #1575)
 - obspy.io.sh:
   * Fix writing of long headers for python3
   * Whitespace in header fields is not ignored anymore (see #1552)
 - obspy.io.stationxml:
   * Datetime fields are written with microseconds to StationXML if
     microseconds are present. (see #1511)
 - obspy.io.zmap:
   * Use first origin/magnitude when writing to zmap if no origin/magnitude is
     set as preferred. (see #1569)
   * Parse origin time seconds as a float to avoid losing accuracy (see #1573)
 - obspy.signal:
   * PPSD: fix warning message on Python 3 that gets shown when waveforms and
     metadata mismatch (see #1506)
 - obspy.taup:
   * Allow for more than 10 phases with identical names (can happen for certain
     custom models, see #1593).

diffstat:

 geography/py-obspy/Makefile |   5 ++---
 geography/py-obspy/PLIST    |  12 +++++++++++-
 geography/py-obspy/distinfo |  10 +++++-----
 3 files changed, 18 insertions(+), 9 deletions(-)

diffs (101 lines):

diff -r 1c6701d293d8 -r e49a0f40161f geography/py-obspy/Makefile
--- a/geography/py-obspy/Makefile       Sat Mar 04 08:41:42 2017 +0000
+++ b/geography/py-obspy/Makefile       Sat Mar 04 11:05:35 2017 +0000
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.9 2016/09/07 13:36:35 richard Exp $
+# $NetBSD: Makefile,v 1.10 2017/03/04 11:05:35 wen Exp $
 
-DISTNAME=      obspy-1.0.2
+DISTNAME=      obspy-1.0.3
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
-PKGREVISION=   1
 CATEGORIES=    geography python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=o/obspy/}
 EXTRACT_SUFX=  .zip
diff -r 1c6701d293d8 -r e49a0f40161f geography/py-obspy/PLIST
--- a/geography/py-obspy/PLIST  Sat Mar 04 08:41:42 2017 +0000
+++ b/geography/py-obspy/PLIST  Sat Mar 04 11:05:35 2017 +0000
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.4 2016/08/20 18:56:55 richard Exp $
+@comment $NetBSD: PLIST,v 1.5 2017/03/04 11:05:35 wen Exp $
 bin/obspy-dataless2resp
 bin/obspy-dataless2xseed
 bin/obspy-flinn-engdahl
@@ -18,6 +18,7 @@
 ${PYSITELIB}/${EGG_INFODIR}/entry_points.txt
 ${PYSITELIB}/${EGG_INFODIR}/namespace_packages.txt
 ${PYSITELIB}/${EGG_INFODIR}/not-zip-safe
+${PYSITELIB}/${EGG_INFODIR}/pbr.json
 ${PYSITELIB}/${EGG_INFODIR}/requires.txt
 ${PYSITELIB}/${EGG_INFODIR}/top_level.txt
 ${PYSITELIB}/obspy/CONTRIBUTORS.txt
@@ -958,6 +959,8 @@
 ${PYSITELIB}/obspy/io/mseed/tests/data/bizarre/endiantest.be-header.le-data.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/bizarre/endiantest.le-header.be-data.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/bizarre/endiantest.le-header.le-data.mseed
+${PYSITELIB}/obspy/io/mseed/tests/data/bizarre/mseed_data_offset_0.mseed
+${PYSITELIB}/obspy/io/mseed/tests/data/bizarre/mseed_no_blkt_1000.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/blockette008.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/brokenlastrecord.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/constructedFileToTestReadViaRecords.mseed
@@ -987,6 +990,7 @@
 ${PYSITELIB}/obspy/io/mseed/tests/data/fullseed_dataquality_R.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/gaps.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/infinite-loop.mseed
+${PYSITELIB}/obspy/io/mseed/tests/data/microsecond_wrap.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/not.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/not2.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/not3.mseed
@@ -995,10 +999,13 @@
 ${PYSITELIB}/obspy/io/mseed/tests/data/one_record_time_corr_applied_but_time_corr_is_zero.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/qualityflags.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/reclen_1024_without_sequence_numbers.mseed
+${PYSITELIB}/obspy/io/mseed/tests/data/single_record_plus_noise_record.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/steim2.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/test.mseed
+${PYSITELIB}/obspy/io/mseed/tests/data/three_records_zero_data_in_middle.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/timingquality.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/data/two_channels.mseed
+${PYSITELIB}/obspy/io/mseed/tests/data/various_noise_records.mseed
 ${PYSITELIB}/obspy/io/mseed/tests/test_mseed_reading_and_writing.py
 ${PYSITELIB}/obspy/io/mseed/tests/test_mseed_reading_and_writing.pyc
 ${PYSITELIB}/obspy/io/mseed/tests/test_mseed_reading_and_writing.pyo
@@ -1387,6 +1394,7 @@
 ${PYSITELIB}/obspy/io/stationxml/tests/data/full_random_stationxml.xml
 ${PYSITELIB}/obspy/io/stationxml/tests/data/full_station_field_station.xml
 ${PYSITELIB}/obspy/io/stationxml/tests/data/minimal_station.xml
+${PYSITELIB}/obspy/io/stationxml/tests/data/minimal_station_with_microseconds.xml
 ${PYSITELIB}/obspy/io/stationxml/tests/data/minimal_with_non_obspy_module_and_sender_tags_station.xml
 ${PYSITELIB}/obspy/io/stationxml/tests/data/no_default_namespace.xml
 ${PYSITELIB}/obspy/io/stationxml/tests/data/stationxml_BK.CMB.__.LKS.xml
@@ -1603,6 +1611,7 @@
 ${PYSITELIB}/obspy/io/zmap/tests/__init__.pyc
 ${PYSITELIB}/obspy/io/zmap/tests/__init__.pyo
 ${PYSITELIB}/obspy/io/zmap/tests/data/neries_events.xml
+${PYSITELIB}/obspy/io/zmap/tests/data/templates.txt
 ${PYSITELIB}/obspy/io/zmap/tests/data/zmap_events.txt
 ${PYSITELIB}/obspy/io/zmap/tests/test_zmap.py
 ${PYSITELIB}/obspy/io/zmap/tests/test_zmap.pyc
@@ -2017,6 +2026,7 @@
 ${PYSITELIB}/obspy/taup/tests/data/iasp91_w_comment.tvel
 ${PYSITELIB}/obspy/taup/tests/data/sample_ttimes_ak135.lst
 ${PYSITELIB}/obspy/taup/tests/data/sample_ttimes_iasp91.lst
+${PYSITELIB}/obspy/taup/tests/data/smooth_geodynamic_model.tvel
 ${PYSITELIB}/obspy/taup/tests/images/cartesian_many_phases.png
 ${PYSITELIB}/obspy/taup/tests/images/cartesian_many_phases_buried_station.png
 ${PYSITELIB}/obspy/taup/tests/images/cartesian_many_phases_single_way.png
diff -r 1c6701d293d8 -r e49a0f40161f geography/py-obspy/distinfo
--- a/geography/py-obspy/distinfo       Sat Mar 04 08:41:42 2017 +0000
+++ b/geography/py-obspy/distinfo       Sat Mar 04 11:05:35 2017 +0000
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.4 2016/08/07 10:36:43 wen Exp $
+$NetBSD: distinfo,v 1.5 2017/03/04 11:05:35 wen Exp $
 
-SHA1 (obspy-1.0.2.zip) = 7c43a884c80b90e987d6bd7786fc9092e34272f3
-RMD160 (obspy-1.0.2.zip) = be379d314d9a0fcf05c40c7c99212ee57e646b5a
-SHA512 (obspy-1.0.2.zip) = 372d0a694fa200055efcb99b69f9451a778ee236bd2423d126772e0bf8fd91dc924167c4116f7711a47d687117e4790f89552ec365bc2fd49db75fc54701ef22
-Size (obspy-1.0.2.zip) = 22774079 bytes
+SHA1 (obspy-1.0.3.zip) = 3a3c4dcf0d0ae4ac5f075ed933c159f43b8e9b6d
+RMD160 (obspy-1.0.3.zip) = 56da2759068e3cdd7d4a78d21d28883947606296
+SHA512 (obspy-1.0.3.zip) = 0c22179e14ec564f711ceece93ee201ca316c5b7f2179c31da83a125000c939d2532511114498a3e9a43fa297a7a22309d919a517aecaa7dde183de44096575f
+Size (obspy-1.0.3.zip) = 22798404 bytes
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