[pkgsrc/trunk]: pkgsrc/biology/bwa Re-add patch to bring timeval definition a...

[he <he%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/e7912102aff1
branches:  trunk
changeset: 373073:e7912102aff1
user:      he <he%pkgsrc.org@localhost>
date:      Wed Dec 27 23:44:01 2017 +0000

description:
Re-add patch to bring timeval definition and select prototype into scope.
Bump PKGREVISION.

diffstat:

 biology/bwa/Makefile              |   3 ++-
 biology/bwa/distinfo              |   3 ++-
 biology/bwa/patches/patch-kopen.c |  15 +++++++++++++++
 3 files changed, 19 insertions(+), 2 deletions(-)

diffs (45 lines):

diff -r 1ee19aa465be -r e7912102aff1 biology/bwa/Makefile
--- a/biology/bwa/Makefile      Wed Dec 27 23:32:37 2017 +0000
+++ b/biology/bwa/Makefile      Wed Dec 27 23:44:01 2017 +0000
@@ -1,7 +1,8 @@
-# $NetBSD: Makefile,v 1.5 2017/12/17 14:30:36 bacon Exp $
+# $NetBSD: Makefile,v 1.6 2017/12/27 23:44:01 he Exp $
 
 DISTNAME=      bwa-0.7.17
 CATEGORIES=    biology
+PKGREVISION=   1
 GITHUB_TAG=     v${PKGVERSION_NOREV}
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=lh3/}
 
diff -r 1ee19aa465be -r e7912102aff1 biology/bwa/distinfo
--- a/biology/bwa/distinfo      Wed Dec 27 23:32:37 2017 +0000
+++ b/biology/bwa/distinfo      Wed Dec 27 23:44:01 2017 +0000
@@ -1,7 +1,8 @@
-$NetBSD: distinfo,v 1.5 2017/12/17 14:30:36 bacon Exp $
+$NetBSD: distinfo,v 1.6 2017/12/27 23:44:01 he Exp $
 
 SHA1 (bwa-0.7.17.tar.gz) = 77f9aac723110227ea51cb42011336d291d03723
 RMD160 (bwa-0.7.17.tar.gz) = d26a266387dee4fc9fcf6eef4f7ffcc076495c22
 SHA512 (bwa-0.7.17.tar.gz) = 114e61b7cc5edcb67172d1eca7be1fa670ea33dd48b5c02c98318e254871363775c0dab327fd7ee7023200a5fedc745fa01cbe0fd9550d783f091d4df6926f48
 Size (bwa-0.7.17.tar.gz) = 232593 bytes
 SHA1 (patch-Makefile) = 72ac08d92540a88da08bf4d988ca3f6132327a6a
+SHA1 (patch-kopen.c) = ecc92efa3ebe4da484aa6760e23de9437b000644
diff -r 1ee19aa465be -r e7912102aff1 biology/bwa/patches/patch-kopen.c
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/bwa/patches/patch-kopen.c Wed Dec 27 23:44:01 2017 +0000
@@ -0,0 +1,15 @@
+$NetBSD: patch-kopen.c,v 1.3 2017/12/27 23:44:01 he Exp $
+
+Add includes for getting timevals and select prototype into scope.
+
+--- kopen.c.orig       2017-10-23 17:10:17.000000000 +0000
++++ kopen.c
+@@ -12,6 +12,8 @@
+ #include <netdb.h>
+ #include <arpa/inet.h>
+ #include <sys/socket.h>
++#include <sys/time.h>
++#include <sys/select.h>
+ #endif
+ 
+ #ifdef USE_MALLOC_WRAPPERS