[pkgsrc/trunk]: pkgsrc/math py-tables: (ex py-pytables) updated to 3.4.4

To: pkgsrc-changes-hg%NetBSD.org@localhost
Subject: [pkgsrc/trunk]: pkgsrc/math py-tables: (ex py-pytables) updated to 3.4.4
From: adam <adam%pkgsrc.org@localhost>
Date: Wed, 15 Jan 2020 09:34:44 +0000
details:   https://anonhg.NetBSD.org/pkgsrc/rev/fac551e708f4
branches:  trunk
changeset: 382430:fac551e708f4
user:      adam <adam%pkgsrc.org@localhost>
date:      Wed Jul 04 06:46:49 2018 +0000

description:
py-tables: (ex py-pytables) updated to 3.4.4

Changes from 3.4.3 to 3.4.4

Improvements

Environment variable to control the use of embedded libraries.
Include citation in repository. gh-690.

Bugs fixed

Fixed import error with numexpr 2.6.5.dev0 gh-685.
Fixed linter warnings.
Fixed for re.split() is version detection. gh-687.
Fixed test failures with Python 2.7 and NumPy 1.14.3 gh-688 & gh-689.

diffstat:

 math/Makefile             |    4 +-
 math/py-pytables/DESCR    |    7 -
 math/py-pytables/Makefile |   41 ------
 math/py-pytables/PLIST    |  291 ---------------------------------------------
 math/py-pytables/distinfo |    6 -
 math/py-tables/DESCR      |    7 +
 math/py-tables/Makefile   |   41 ++++++
 math/py-tables/PLIST      |  294 ++++++++++++++++++++++++++++++++++++++++++++++
 math/py-tables/distinfo   |    6 +
 9 files changed, 350 insertions(+), 347 deletions(-)

diffs (truncated from 750 to 300 lines):

diff -r 2e29e24f69d8 -r fac551e708f4 math/Makefile
--- a/math/Makefile     Wed Jul 04 05:18:31 2018 +0000
+++ b/math/Makefile     Wed Jul 04 06:46:49 2018 +0000
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.390 2018/06/20 05:14:34 mef Exp $
+# $NetBSD: Makefile,v 1.391 2018/07/04 06:46:49 adam Exp $
 
 COMMENT=       Mathematics
 
@@ -301,7 +301,6 @@
 SUBDIR+=       py-pandas-datareader
 SUBDIR+=       py-patsy
 SUBDIR+=       py-powerlaw
-SUBDIR+=       py-pytables
 SUBDIR+=       py-pywavelets
 SUBDIR+=       py-quadprog
 SUBDIR+=       py-roman
@@ -312,6 +311,7 @@
 SUBDIR+=       py-simpleeval
 SUBDIR+=       py-statsmodels
 SUBDIR+=       py-sympy
+SUBDIR+=       py-tables
 SUBDIR+=       py-tensorboard
 SUBDIR+=       py-z3
 SUBDIR+=       py-z3solver
diff -r 2e29e24f69d8 -r fac551e708f4 math/py-pytables/DESCR
--- a/math/py-pytables/DESCR    Wed Jul 04 05:18:31 2018 +0000
+++ /dev/null   Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-PyTables is a hierarchical database package designed to efficiently
-manage very large amounts of data. PyTables is built on top of the
-HDF5 library and the numarray package. It features an object-oriented
-interface that, combined with natural naming and C-code generated from
-Pyrex sources, makes it a fast, yet extremely easy-to-use tool for
-interactively saving and retrieving very large amounts of data.  It also
-provides flexible indexed access on disk to anywhere in the data.
diff -r 2e29e24f69d8 -r fac551e708f4 math/py-pytables/Makefile
--- a/math/py-pytables/Makefile Wed Jul 04 05:18:31 2018 +0000
+++ /dev/null   Thu Jan 01 00:00:00 1970 +0000
@@ -1,41 +0,0 @@
-# $NetBSD: Makefile,v 1.37 2018/03/29 18:08:27 adam Exp $
-
-DISTNAME=      tables-3.4.2
-PKGNAME=       ${PYPKGPREFIX}-py${DISTNAME}
-PKGREVISION=   1
-CATEGORIES=    math python
-MASTER_SITES=  ${MASTER_SITE_PYPI:=t/tables/}
-
-MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
-HOMEPAGE=      http://www.pytables.org/
-COMMENT=       Database package for large amounts of data
-LICENSE=       modified-bsd
-
-PYSETUPBUILDARGS+=     --blosc=${BUILDLINK_PREFIX.blosc}
-PYSETUPBUILDARGS+=     --bzip2=${BUILDLINK_PREFIX.bzip2}
-PYSETUPBUILDARGS+=     --hdf5=${BUILDLINK_PREFIX.hdf5}
-PYSETUPBUILDARGS+=     --lzo=${BUILDLINK_PREFIX.lzo}
-
-DEPENDS+=      ${PYPKGPREFIX}-cython-[0-9]*:../../devel/py-cython
-DEPENDS+=      ${PYPKGPREFIX}-numexpr>=2.0:../../math/py-numexpr
-
-USE_LANGUAGES=         c c++
-
-post-install:
-       cd ${DESTDIR}${PREFIX}/bin && \
-               mv pt2to3 pt2to3${PYVERSSUFFIX} && \
-               mv ptdump ptdump${PYVERSSUFFIX} && \
-               mv ptrepack ptrepack${PYVERSSUFFIX} && \
-               mv pttree pttree${PYVERSSUFFIX}
-
-do-test:
-       cd ${WRKSRC}/tables/tests && ${PYTHONBIN} test_all.py
-
-.include "../../archivers/bzip2/buildlink3.mk"
-.include "../../archivers/lzo/buildlink3.mk"
-.include "../../devel/blosc/buildlink3.mk"
-.include "../../devel/hdf5/buildlink3.mk"
-.include "../../devel/zlib/buildlink3.mk"
-.include "../../math/py-numpy/buildlink3.mk"
-.include "../../lang/python/egg.mk"
-.include "../../mk/bsd.pkg.mk"
diff -r 2e29e24f69d8 -r fac551e708f4 math/py-pytables/PLIST
--- a/math/py-pytables/PLIST    Wed Jul 04 05:18:31 2018 +0000
+++ /dev/null   Thu Jan 01 00:00:00 1970 +0000
@@ -1,291 +0,0 @@
-@comment $NetBSD: PLIST,v 1.16 2018/03/29 18:08:27 adam Exp $
-bin/pt2to3${PYVERSSUFFIX}
-bin/ptdump${PYVERSSUFFIX}
-bin/ptrepack${PYVERSSUFFIX}
-bin/pttree${PYVERSSUFFIX}
-${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
-${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
-${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
-${PYSITELIB}/${EGG_INFODIR}/entry_points.txt
-${PYSITELIB}/${EGG_INFODIR}/not-zip-safe
-${PYSITELIB}/${EGG_INFODIR}/requires.txt
-${PYSITELIB}/${EGG_INFODIR}/top_level.txt
-${PYSITELIB}/tables/__init__.py
-${PYSITELIB}/tables/__init__.pyc
-${PYSITELIB}/tables/__init__.pyo
-${PYSITELIB}/tables/_comp_bzip2.so
-${PYSITELIB}/tables/_comp_lzo.so
-${PYSITELIB}/tables/array.py
-${PYSITELIB}/tables/array.pyc
-${PYSITELIB}/tables/array.pyo
-${PYSITELIB}/tables/atom.py
-${PYSITELIB}/tables/atom.pyc
-${PYSITELIB}/tables/atom.pyo
-${PYSITELIB}/tables/attributeset.py
-${PYSITELIB}/tables/attributeset.pyc
-${PYSITELIB}/tables/attributeset.pyo
-${PYSITELIB}/tables/carray.py
-${PYSITELIB}/tables/carray.pyc
-${PYSITELIB}/tables/carray.pyo
-${PYSITELIB}/tables/conditions.py
-${PYSITELIB}/tables/conditions.pyc
-${PYSITELIB}/tables/conditions.pyo
-${PYSITELIB}/tables/description.py
-${PYSITELIB}/tables/description.pyc
-${PYSITELIB}/tables/description.pyo
-${PYSITELIB}/tables/earray.py
-${PYSITELIB}/tables/earray.pyc
-${PYSITELIB}/tables/earray.pyo
-${PYSITELIB}/tables/exceptions.py
-${PYSITELIB}/tables/exceptions.pyc
-${PYSITELIB}/tables/exceptions.pyo
-${PYSITELIB}/tables/expression.py
-${PYSITELIB}/tables/expression.pyc
-${PYSITELIB}/tables/expression.pyo
-${PYSITELIB}/tables/file.py
-${PYSITELIB}/tables/file.pyc
-${PYSITELIB}/tables/file.pyo
-${PYSITELIB}/tables/filters.py
-${PYSITELIB}/tables/filters.pyc
-${PYSITELIB}/tables/filters.pyo
-${PYSITELIB}/tables/flavor.py
-${PYSITELIB}/tables/flavor.pyc
-${PYSITELIB}/tables/flavor.pyo
-${PYSITELIB}/tables/group.py
-${PYSITELIB}/tables/group.pyc
-${PYSITELIB}/tables/group.pyo
-${PYSITELIB}/tables/hdf5extension.so
-${PYSITELIB}/tables/idxutils.py
-${PYSITELIB}/tables/idxutils.pyc
-${PYSITELIB}/tables/idxutils.pyo
-${PYSITELIB}/tables/index.py
-${PYSITELIB}/tables/index.pyc
-${PYSITELIB}/tables/index.pyo
-${PYSITELIB}/tables/indexes.py
-${PYSITELIB}/tables/indexes.pyc
-${PYSITELIB}/tables/indexes.pyo
-${PYSITELIB}/tables/indexesextension.so
-${PYSITELIB}/tables/leaf.py
-${PYSITELIB}/tables/leaf.pyc
-${PYSITELIB}/tables/leaf.pyo
-${PYSITELIB}/tables/link.py
-${PYSITELIB}/tables/link.pyc
-${PYSITELIB}/tables/link.pyo
-${PYSITELIB}/tables/linkextension.so
-${PYSITELIB}/tables/lrucacheextension.so
-${PYSITELIB}/tables/misc/__init__.py
-${PYSITELIB}/tables/misc/__init__.pyc
-${PYSITELIB}/tables/misc/__init__.pyo
-${PYSITELIB}/tables/misc/enum.py
-${PYSITELIB}/tables/misc/enum.pyc
-${PYSITELIB}/tables/misc/enum.pyo
-${PYSITELIB}/tables/misc/proxydict.py
-${PYSITELIB}/tables/misc/proxydict.pyc
-${PYSITELIB}/tables/misc/proxydict.pyo
-${PYSITELIB}/tables/node.py
-${PYSITELIB}/tables/node.pyc
-${PYSITELIB}/tables/node.pyo
-${PYSITELIB}/tables/nodes/__init__.py
-${PYSITELIB}/tables/nodes/__init__.pyc
-${PYSITELIB}/tables/nodes/__init__.pyo
-${PYSITELIB}/tables/nodes/filenode.py
-${PYSITELIB}/tables/nodes/filenode.pyc
-${PYSITELIB}/tables/nodes/filenode.pyo
-${PYSITELIB}/tables/nodes/tests/__init__.py
-${PYSITELIB}/tables/nodes/tests/__init__.pyc
-${PYSITELIB}/tables/nodes/tests/__init__.pyo
-${PYSITELIB}/tables/nodes/tests/test_filenode.dat
-${PYSITELIB}/tables/nodes/tests/test_filenode.py
-${PYSITELIB}/tables/nodes/tests/test_filenode.pyc
-${PYSITELIB}/tables/nodes/tests/test_filenode.pyo
-${PYSITELIB}/tables/nodes/tests/test_filenode.xbm
-${PYSITELIB}/tables/nodes/tests/test_filenode_v1.h5
-${PYSITELIB}/tables/parameters.py
-${PYSITELIB}/tables/parameters.pyc
-${PYSITELIB}/tables/parameters.pyo
-${PYSITELIB}/tables/path.py
-${PYSITELIB}/tables/path.pyc
-${PYSITELIB}/tables/path.pyo
-${PYSITELIB}/tables/registry.py
-${PYSITELIB}/tables/registry.pyc
-${PYSITELIB}/tables/registry.pyo
-${PYSITELIB}/tables/req_versions.py
-${PYSITELIB}/tables/req_versions.pyc
-${PYSITELIB}/tables/req_versions.pyo
-${PYSITELIB}/tables/scripts/__init__.py
-${PYSITELIB}/tables/scripts/__init__.pyc
-${PYSITELIB}/tables/scripts/__init__.pyo
-${PYSITELIB}/tables/scripts/pt2to3.py
-${PYSITELIB}/tables/scripts/pt2to3.pyc
-${PYSITELIB}/tables/scripts/pt2to3.pyo
-${PYSITELIB}/tables/scripts/ptdump.py
-${PYSITELIB}/tables/scripts/ptdump.pyc
-${PYSITELIB}/tables/scripts/ptdump.pyo
-${PYSITELIB}/tables/scripts/ptrepack.py
-${PYSITELIB}/tables/scripts/ptrepack.pyc
-${PYSITELIB}/tables/scripts/ptrepack.pyo
-${PYSITELIB}/tables/scripts/pttree.py
-${PYSITELIB}/tables/scripts/pttree.pyc
-${PYSITELIB}/tables/scripts/pttree.pyo
-${PYSITELIB}/tables/table.py
-${PYSITELIB}/tables/table.pyc
-${PYSITELIB}/tables/table.pyo
-${PYSITELIB}/tables/tableextension.so
-${PYSITELIB}/tables/tests/Table2_1_lzo_nrv2e_shuffle.h5
-${PYSITELIB}/tables/tests/Tables_lzo1.h5
-${PYSITELIB}/tables/tests/Tables_lzo1_shuffle.h5
-${PYSITELIB}/tables/tests/Tables_lzo2.h5
-${PYSITELIB}/tables/tests/Tables_lzo2_shuffle.h5
-${PYSITELIB}/tables/tests/__init__.py
-${PYSITELIB}/tables/tests/__init__.pyc
-${PYSITELIB}/tables/tests/__init__.pyo
-${PYSITELIB}/tables/tests/array_mdatom.h5
-${PYSITELIB}/tables/tests/attr-u16.h5
-${PYSITELIB}/tables/tests/blosc_bigendian.h5
-${PYSITELIB}/tables/tests/bug-idx.h5
-${PYSITELIB}/tables/tests/check_leaks.py
-${PYSITELIB}/tables/tests/check_leaks.pyc
-${PYSITELIB}/tables/tests/check_leaks.pyo
-${PYSITELIB}/tables/tests/common.py
-${PYSITELIB}/tables/tests/common.pyc
-${PYSITELIB}/tables/tests/common.pyo
-${PYSITELIB}/tables/tests/create_backcompat_indexes.py
-${PYSITELIB}/tables/tests/create_backcompat_indexes.pyc
-${PYSITELIB}/tables/tests/create_backcompat_indexes.pyo
-${PYSITELIB}/tables/tests/elink.h5
-${PYSITELIB}/tables/tests/elink2.h5
-${PYSITELIB}/tables/tests/ex-noattr.h5
-${PYSITELIB}/tables/tests/flavored_vlarrays-format1.6.h5
-${PYSITELIB}/tables/tests/float.h5
-${PYSITELIB}/tables/tests/idx-std-1.x.h5
-${PYSITELIB}/tables/tests/indexes_2_0.h5
-${PYSITELIB}/tables/tests/indexes_2_1.h5
-${PYSITELIB}/tables/tests/issue_368.h5
-${PYSITELIB}/tables/tests/issue_560.h5
-${PYSITELIB}/tables/tests/matlab_file.mat
-${PYSITELIB}/tables/tests/nested-type-with-gaps.h5
-${PYSITELIB}/tables/tests/non-chunked-table.h5
-${PYSITELIB}/tables/tests/oldflavor_numeric.h5
-${PYSITELIB}/tables/tests/python2.h5
-${PYSITELIB}/tables/tests/python3.h5
-${PYSITELIB}/tables/tests/scalar.h5
-${PYSITELIB}/tables/tests/slink.h5
-${PYSITELIB}/tables/tests/smpl_SDSextendible.h5
-${PYSITELIB}/tables/tests/smpl_compound_chunked.h5
-${PYSITELIB}/tables/tests/smpl_enum.h5
-${PYSITELIB}/tables/tests/smpl_f64be.h5
-${PYSITELIB}/tables/tests/smpl_f64le.h5
-${PYSITELIB}/tables/tests/smpl_i32be.h5
-${PYSITELIB}/tables/tests/smpl_i32le.h5
-${PYSITELIB}/tables/tests/smpl_i64be.h5
-${PYSITELIB}/tables/tests/smpl_i64le.h5
-${PYSITELIB}/tables/tests/smpl_unsupptype.h5
-${PYSITELIB}/tables/tests/test_all.py
-${PYSITELIB}/tables/tests/test_all.pyc
-${PYSITELIB}/tables/tests/test_all.pyo
-${PYSITELIB}/tables/tests/test_array.py
-${PYSITELIB}/tables/tests/test_array.pyc
-${PYSITELIB}/tables/tests/test_array.pyo
-${PYSITELIB}/tables/tests/test_attributes.py
-${PYSITELIB}/tables/tests/test_attributes.pyc
-${PYSITELIB}/tables/tests/test_attributes.pyo
-${PYSITELIB}/tables/tests/test_aux.py
-${PYSITELIB}/tables/tests/test_aux.pyc
-${PYSITELIB}/tables/tests/test_aux.pyo
-${PYSITELIB}/tables/tests/test_backcompat.py
-${PYSITELIB}/tables/tests/test_backcompat.pyc
-${PYSITELIB}/tables/tests/test_backcompat.pyo
-${PYSITELIB}/tables/tests/test_basics.py
-${PYSITELIB}/tables/tests/test_basics.pyc
-${PYSITELIB}/tables/tests/test_basics.pyo
-${PYSITELIB}/tables/tests/test_carray.py
-${PYSITELIB}/tables/tests/test_carray.pyc
-${PYSITELIB}/tables/tests/test_carray.pyo
-${PYSITELIB}/tables/tests/test_create.py
-${PYSITELIB}/tables/tests/test_create.pyc
-${PYSITELIB}/tables/tests/test_create.pyo
-${PYSITELIB}/tables/tests/test_do_undo.py
-${PYSITELIB}/tables/tests/test_do_undo.pyc
-${PYSITELIB}/tables/tests/test_do_undo.pyo
-${PYSITELIB}/tables/tests/test_earray.py
-${PYSITELIB}/tables/tests/test_earray.pyc
-${PYSITELIB}/tables/tests/test_earray.pyo
-${PYSITELIB}/tables/tests/test_enum.py
-${PYSITELIB}/tables/tests/test_enum.pyc
-${PYSITELIB}/tables/tests/test_enum.pyo
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