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[pkgsrc/trunk]: pkgsrc/math/eigen3 Update eigen3 to 3.3.4
details: https://anonhg.NetBSD.org/pkgsrc/rev/892ca568e785
branches: trunk
changeset: 368319:892ca568e785
user: prlw1 <prlw1%pkgsrc.org@localhost>
date: Thu Sep 14 11:21:03 2017 +0000
description:
Update eigen3 to 3.3.4
Changes that might impact existing code
Eigen 3.3 fixes a few shortcomings that might impact existing code:
* Eigen 3.3 clarifies the usage of the Index type in SparseMatrix,
PermutationMatrix, Transpositions, as detailed below.
* The normalize and normalized methods will now leave their input
unchanged if its norm is 0 or too close to 0. Previously this
resulted in a vector containing NaNs or infinities.
* internal::significant_decimals_impl is deprecated and users of
custom scalar types are encouraged to overload
NumTraits<>::digits10().
In Eigen 3.3, the evaluation mechanism of expressions has been
completely rewritten. c.f. http://eigen.tuxfamily.org/index.php?title=3.3
Looks as though C++11 support was added and Eigen 2 support removed.
Detailed changelog:
http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.4
diffstat:
math/eigen3/Makefile | 9 +-
math/eigen3/PLIST | 226 ++++++++++++----
math/eigen3/distinfo | 12 +-
math/eigen3/patches/patch-CMakeLists.txt | 15 -
math/eigen3/patches/patch-bench_spbench_CMakeLists.txt | 15 +
5 files changed, 198 insertions(+), 79 deletions(-)
diffs (truncated from 516 to 300 lines):
diff -r 5007a9c57715 -r 892ca568e785 math/eigen3/Makefile
--- a/math/eigen3/Makefile Thu Sep 14 10:52:35 2017 +0000
+++ b/math/eigen3/Makefile Thu Sep 14 11:21:03 2017 +0000
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.8 2016/09/13 14:57:39 prlw1 Exp $
+# $NetBSD: Makefile,v 1.9 2017/09/14 11:21:03 prlw1 Exp $
-DISTNAME= 3.2.9
+DISTNAME= 3.3.4
PKGNAME= eigen3-${DISTNAME}
CATEGORIES= math
MASTER_SITES= http://bitbucket.org/eigen/eigen/get/
@@ -16,7 +16,10 @@
USE_CMAKE= yes
CMAKE_ARG_PATH= ..
CONFIGURE_DIRS= _build
-WRKSRC= ${WRKDIR}/eigen-eigen-dc6cfdf9bcec
+WRKSRC= ${WRKDIR}/eigen-eigen-5a0156e40feb
+
+CMAKE_ARGS+= -DCMAKEPACKAGE_INSTALL_DIR=${PREFIX}/lib/cmake/eigen3
+CMAKE_ARGS+= -DPKGCONFIG_INSTALL_DIR=${PREFIX}/lib/pkgconfig
PKGCONFIG_OVERRIDE+= eigen.pc.in
diff -r 5007a9c57715 -r 892ca568e785 math/eigen3/PLIST
--- a/math/eigen3/PLIST Thu Sep 14 10:52:35 2017 +0000
+++ b/math/eigen3/PLIST Thu Sep 14 11:21:03 2017 +0000
@@ -1,18 +1,15 @@
-@comment $NetBSD: PLIST,v 1.3 2015/11/15 12:06:33 prlw1 Exp $
-include/eigen3/Eigen/Array
+@comment $NetBSD: PLIST,v 1.4 2017/09/14 11:21:03 prlw1 Exp $
include/eigen3/Eigen/Cholesky
include/eigen3/Eigen/CholmodSupport
include/eigen3/Eigen/Core
include/eigen3/Eigen/Dense
include/eigen3/Eigen/Eigen
-include/eigen3/Eigen/Eigen2Support
include/eigen3/Eigen/Eigenvalues
include/eigen3/Eigen/Geometry
include/eigen3/Eigen/Householder
include/eigen3/Eigen/IterativeLinearSolvers
include/eigen3/Eigen/Jacobi
include/eigen3/Eigen/LU
-include/eigen3/Eigen/LeastSquares
include/eigen3/Eigen/MetisSupport
include/eigen3/Eigen/OrderingMethods
include/eigen3/Eigen/PaStiXSupport
@@ -33,20 +30,24 @@
include/eigen3/Eigen/UmfPackSupport
include/eigen3/Eigen/src/Cholesky/LDLT.h
include/eigen3/Eigen/src/Cholesky/LLT.h
-include/eigen3/Eigen/src/Cholesky/LLT_MKL.h
+include/eigen3/Eigen/src/Cholesky/LLT_LAPACKE.h
include/eigen3/Eigen/src/CholmodSupport/CholmodSupport.h
include/eigen3/Eigen/src/Core/Array.h
include/eigen3/Eigen/src/Core/ArrayBase.h
include/eigen3/Eigen/src/Core/ArrayWrapper.h
include/eigen3/Eigen/src/Core/Assign.h
+include/eigen3/Eigen/src/Core/AssignEvaluator.h
include/eigen3/Eigen/src/Core/Assign_MKL.h
include/eigen3/Eigen/src/Core/BandMatrix.h
include/eigen3/Eigen/src/Core/Block.h
include/eigen3/Eigen/src/Core/BooleanRedux.h
include/eigen3/Eigen/src/Core/CommaInitializer.h
+include/eigen3/Eigen/src/Core/ConditionEstimator.h
+include/eigen3/Eigen/src/Core/CoreEvaluators.h
include/eigen3/Eigen/src/Core/CoreIterators.h
include/eigen3/Eigen/src/Core/CwiseBinaryOp.h
include/eigen3/Eigen/src/Core/CwiseNullaryOp.h
+include/eigen3/Eigen/src/Core/CwiseTernaryOp.h
include/eigen3/Eigen/src/Core/CwiseUnaryOp.h
include/eigen3/Eigen/src/Core/CwiseUnaryView.h
include/eigen3/Eigen/src/Core/DenseBase.h
@@ -57,17 +58,17 @@
include/eigen3/Eigen/src/Core/DiagonalProduct.h
include/eigen3/Eigen/src/Core/Dot.h
include/eigen3/Eigen/src/Core/EigenBase.h
-include/eigen3/Eigen/src/Core/Flagged.h
include/eigen3/Eigen/src/Core/ForceAlignedAccess.h
-include/eigen3/Eigen/src/Core/Functors.h
include/eigen3/Eigen/src/Core/Fuzzy.h
include/eigen3/Eigen/src/Core/GeneralProduct.h
include/eigen3/Eigen/src/Core/GenericPacketMath.h
include/eigen3/Eigen/src/Core/GlobalFunctions.h
include/eigen3/Eigen/src/Core/IO.h
+include/eigen3/Eigen/src/Core/Inverse.h
include/eigen3/Eigen/src/Core/Map.h
include/eigen3/Eigen/src/Core/MapBase.h
include/eigen3/Eigen/src/Core/MathFunctions.h
+include/eigen3/Eigen/src/Core/MathFunctionsImpl.h
include/eigen3/Eigen/src/Core/Matrix.h
include/eigen3/Eigen/src/Core/MatrixBase.h
include/eigen3/Eigen/src/Core/NestByValue.h
@@ -75,7 +76,8 @@
include/eigen3/Eigen/src/Core/NumTraits.h
include/eigen3/Eigen/src/Core/PermutationMatrix.h
include/eigen3/Eigen/src/Core/PlainObjectBase.h
-include/eigen3/Eigen/src/Core/ProductBase.h
+include/eigen3/Eigen/src/Core/Product.h
+include/eigen3/Eigen/src/Core/ProductEvaluators.h
include/eigen3/Eigen/src/Core/Random.h
include/eigen3/Eigen/src/Core/Redux.h
include/eigen3/Eigen/src/Core/Ref.h
@@ -85,7 +87,9 @@
include/eigen3/Eigen/src/Core/Select.h
include/eigen3/Eigen/src/Core/SelfAdjointView.h
include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h
+include/eigen3/Eigen/src/Core/Solve.h
include/eigen3/Eigen/src/Core/SolveTriangular.h
+include/eigen3/Eigen/src/Core/SolverBase.h
include/eigen3/Eigen/src/Core/StableNorm.h
include/eigen3/Eigen/src/Core/Stride.h
include/eigen3/Eigen/src/Core/Swap.h
@@ -95,35 +99,58 @@
include/eigen3/Eigen/src/Core/VectorBlock.h
include/eigen3/Eigen/src/Core/VectorwiseOp.h
include/eigen3/Eigen/src/Core/Visitor.h
+include/eigen3/Eigen/src/Core/arch/AVX/Complex.h
+include/eigen3/Eigen/src/Core/arch/AVX/MathFunctions.h
+include/eigen3/Eigen/src/Core/arch/AVX/PacketMath.h
+include/eigen3/Eigen/src/Core/arch/AVX/TypeCasting.h
+include/eigen3/Eigen/src/Core/arch/AVX512/MathFunctions.h
+include/eigen3/Eigen/src/Core/arch/AVX512/PacketMath.h
include/eigen3/Eigen/src/Core/arch/AltiVec/Complex.h
+include/eigen3/Eigen/src/Core/arch/AltiVec/MathFunctions.h
include/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h
+include/eigen3/Eigen/src/Core/arch/CUDA/Complex.h
+include/eigen3/Eigen/src/Core/arch/CUDA/Half.h
+include/eigen3/Eigen/src/Core/arch/CUDA/MathFunctions.h
+include/eigen3/Eigen/src/Core/arch/CUDA/PacketMath.h
+include/eigen3/Eigen/src/Core/arch/CUDA/PacketMathHalf.h
+include/eigen3/Eigen/src/Core/arch/CUDA/TypeCasting.h
include/eigen3/Eigen/src/Core/arch/Default/Settings.h
include/eigen3/Eigen/src/Core/arch/NEON/Complex.h
+include/eigen3/Eigen/src/Core/arch/NEON/MathFunctions.h
include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h
include/eigen3/Eigen/src/Core/arch/SSE/Complex.h
include/eigen3/Eigen/src/Core/arch/SSE/MathFunctions.h
include/eigen3/Eigen/src/Core/arch/SSE/PacketMath.h
-include/eigen3/Eigen/src/Core/products/CoeffBasedProduct.h
+include/eigen3/Eigen/src/Core/arch/SSE/TypeCasting.h
+include/eigen3/Eigen/src/Core/arch/ZVector/Complex.h
+include/eigen3/Eigen/src/Core/arch/ZVector/MathFunctions.h
+include/eigen3/Eigen/src/Core/arch/ZVector/PacketMath.h
+include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h
+include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h
+include/eigen3/Eigen/src/Core/functors/NullaryFunctors.h
+include/eigen3/Eigen/src/Core/functors/StlFunctors.h
+include/eigen3/Eigen/src/Core/functors/TernaryFunctors.h
+include/eigen3/Eigen/src/Core/functors/UnaryFunctors.h
include/eigen3/Eigen/src/Core/products/GeneralBlockPanelKernel.h
include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix.h
include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
-include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_MKL.h
-include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix_MKL.h
+include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h
+include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h
include/eigen3/Eigen/src/Core/products/GeneralMatrixVector.h
-include/eigen3/Eigen/src/Core/products/GeneralMatrixVector_MKL.h
+include/eigen3/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h
include/eigen3/Eigen/src/Core/products/Parallelizer.h
include/eigen3/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
-include/eigen3/Eigen/src/Core/products/SelfadjointMatrixMatrix_MKL.h
+include/eigen3/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h
include/eigen3/Eigen/src/Core/products/SelfadjointMatrixVector.h
-include/eigen3/Eigen/src/Core/products/SelfadjointMatrixVector_MKL.h
+include/eigen3/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h
include/eigen3/Eigen/src/Core/products/SelfadjointProduct.h
include/eigen3/Eigen/src/Core/products/SelfadjointRank2Update.h
include/eigen3/Eigen/src/Core/products/TriangularMatrixMatrix.h
-include/eigen3/Eigen/src/Core/products/TriangularMatrixMatrix_MKL.h
+include/eigen3/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h
include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h
-include/eigen3/Eigen/src/Core/products/TriangularMatrixVector_MKL.h
+include/eigen3/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h
include/eigen3/Eigen/src/Core/products/TriangularSolverMatrix.h
-include/eigen3/Eigen/src/Core/products/TriangularSolverMatrix_MKL.h
+include/eigen3/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h
include/eigen3/Eigen/src/Core/products/TriangularSolverVector.h
include/eigen3/Eigen/src/Core/util/BlasUtil.h
include/eigen3/Eigen/src/Core/util/Constants.h
@@ -137,35 +164,9 @@
include/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h
include/eigen3/Eigen/src/Core/util/StaticAssert.h
include/eigen3/Eigen/src/Core/util/XprHelper.h
-include/eigen3/Eigen/src/Eigen2Support/Block.h
-include/eigen3/Eigen/src/Eigen2Support/Cwise.h
-include/eigen3/Eigen/src/Eigen2Support/CwiseOperators.h
-include/eigen3/Eigen/src/Eigen2Support/Geometry/AlignedBox.h
-include/eigen3/Eigen/src/Eigen2Support/Geometry/All.h
-include/eigen3/Eigen/src/Eigen2Support/Geometry/AngleAxis.h
-include/eigen3/Eigen/src/Eigen2Support/Geometry/Hyperplane.h
-include/eigen3/Eigen/src/Eigen2Support/Geometry/ParametrizedLine.h
-include/eigen3/Eigen/src/Eigen2Support/Geometry/Quaternion.h
-include/eigen3/Eigen/src/Eigen2Support/Geometry/Rotation2D.h
-include/eigen3/Eigen/src/Eigen2Support/Geometry/RotationBase.h
-include/eigen3/Eigen/src/Eigen2Support/Geometry/Scaling.h
-include/eigen3/Eigen/src/Eigen2Support/Geometry/Transform.h
-include/eigen3/Eigen/src/Eigen2Support/Geometry/Translation.h
-include/eigen3/Eigen/src/Eigen2Support/LU.h
-include/eigen3/Eigen/src/Eigen2Support/Lazy.h
-include/eigen3/Eigen/src/Eigen2Support/LeastSquares.h
-include/eigen3/Eigen/src/Eigen2Support/Macros.h
-include/eigen3/Eigen/src/Eigen2Support/MathFunctions.h
-include/eigen3/Eigen/src/Eigen2Support/Memory.h
-include/eigen3/Eigen/src/Eigen2Support/Meta.h
-include/eigen3/Eigen/src/Eigen2Support/Minor.h
-include/eigen3/Eigen/src/Eigen2Support/QR.h
-include/eigen3/Eigen/src/Eigen2Support/SVD.h
-include/eigen3/Eigen/src/Eigen2Support/TriangularSolver.h
-include/eigen3/Eigen/src/Eigen2Support/VectorBlock.h
include/eigen3/Eigen/src/Eigenvalues/ComplexEigenSolver.h
include/eigen3/Eigen/src/Eigenvalues/ComplexSchur.h
-include/eigen3/Eigen/src/Eigenvalues/ComplexSchur_MKL.h
+include/eigen3/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
include/eigen3/Eigen/src/Eigenvalues/EigenSolver.h
include/eigen3/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
include/eigen3/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
@@ -173,9 +174,9 @@
include/eigen3/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
include/eigen3/Eigen/src/Eigenvalues/RealQZ.h
include/eigen3/Eigen/src/Eigenvalues/RealSchur.h
-include/eigen3/Eigen/src/Eigenvalues/RealSchur_MKL.h
+include/eigen3/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h
include/eigen3/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
-include/eigen3/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_MKL.h
+include/eigen3/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h
include/eigen3/Eigen/src/Eigenvalues/Tridiagonalization.h
include/eigen3/Eigen/src/Geometry/AlignedBox.h
include/eigen3/Eigen/src/Geometry/AngleAxis.h
@@ -198,14 +199,17 @@
include/eigen3/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
include/eigen3/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
include/eigen3/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
+include/eigen3/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h
include/eigen3/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
include/eigen3/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
+include/eigen3/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h
+include/eigen3/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h
include/eigen3/Eigen/src/Jacobi/Jacobi.h
include/eigen3/Eigen/src/LU/Determinant.h
include/eigen3/Eigen/src/LU/FullPivLU.h
-include/eigen3/Eigen/src/LU/Inverse.h
+include/eigen3/Eigen/src/LU/InverseImpl.h
include/eigen3/Eigen/src/LU/PartialPivLU.h
-include/eigen3/Eigen/src/LU/PartialPivLU_MKL.h
+include/eigen3/Eigen/src/LU/PartialPivLU_LAPACKE.h
include/eigen3/Eigen/src/LU/arch/Inverse_SSE.h
include/eigen3/Eigen/src/MetisSupport/MetisSupport.h
include/eigen3/Eigen/src/OrderingMethods/Amd.h
@@ -214,13 +218,16 @@
include/eigen3/Eigen/src/PaStiXSupport/PaStiXSupport.h
include/eigen3/Eigen/src/PardisoSupport/PardisoSupport.h
include/eigen3/Eigen/src/QR/ColPivHouseholderQR.h
-include/eigen3/Eigen/src/QR/ColPivHouseholderQR_MKL.h
+include/eigen3/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h
+include/eigen3/Eigen/src/QR/CompleteOrthogonalDecomposition.h
include/eigen3/Eigen/src/QR/FullPivHouseholderQR.h
include/eigen3/Eigen/src/QR/HouseholderQR.h
-include/eigen3/Eigen/src/QR/HouseholderQR_MKL.h
+include/eigen3/Eigen/src/QR/HouseholderQR_LAPACKE.h
include/eigen3/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
+include/eigen3/Eigen/src/SVD/BDCSVD.h
include/eigen3/Eigen/src/SVD/JacobiSVD.h
-include/eigen3/Eigen/src/SVD/JacobiSVD_MKL.h
+include/eigen3/Eigen/src/SVD/JacobiSVD_LAPACKE.h
+include/eigen3/Eigen/src/SVD/SVDBase.h
include/eigen3/Eigen/src/SVD/UpperBidiagonalization.h
include/eigen3/Eigen/src/SparseCholesky/SimplicialCholesky.h
include/eigen3/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
@@ -228,20 +235,25 @@
include/eigen3/Eigen/src/SparseCore/CompressedStorage.h
include/eigen3/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
include/eigen3/Eigen/src/SparseCore/MappedSparseMatrix.h
+include/eigen3/Eigen/src/SparseCore/SparseAssign.h
include/eigen3/Eigen/src/SparseCore/SparseBlock.h
include/eigen3/Eigen/src/SparseCore/SparseColEtree.h
+include/eigen3/Eigen/src/SparseCore/SparseCompressedBase.h
include/eigen3/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
include/eigen3/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
include/eigen3/Eigen/src/SparseCore/SparseDenseProduct.h
include/eigen3/Eigen/src/SparseCore/SparseDiagonalProduct.h
include/eigen3/Eigen/src/SparseCore/SparseDot.h
include/eigen3/Eigen/src/SparseCore/SparseFuzzy.h
+include/eigen3/Eigen/src/SparseCore/SparseMap.h
include/eigen3/Eigen/src/SparseCore/SparseMatrix.h
include/eigen3/Eigen/src/SparseCore/SparseMatrixBase.h
include/eigen3/Eigen/src/SparseCore/SparsePermutation.h
include/eigen3/Eigen/src/SparseCore/SparseProduct.h
include/eigen3/Eigen/src/SparseCore/SparseRedux.h
+include/eigen3/Eigen/src/SparseCore/SparseRef.h
include/eigen3/Eigen/src/SparseCore/SparseSelfAdjointView.h
+include/eigen3/Eigen/src/SparseCore/SparseSolverBase.h
include/eigen3/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
include/eigen3/Eigen/src/SparseCore/SparseTranspose.h
include/eigen3/Eigen/src/SparseCore/SparseTriangularView.h
@@ -275,9 +287,11 @@
include/eigen3/Eigen/src/UmfPackSupport/UmfPackSupport.h
include/eigen3/Eigen/src/misc/Image.h
include/eigen3/Eigen/src/misc/Kernel.h
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