[pkgsrc/trunk]: pkgsrc/math/py-scipy py-scipy: updated to 1.0.0

[adam <adam%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/8b2d5457cfca
branches:  trunk
changeset: 371065:8b2d5457cfca
user:      adam <adam%pkgsrc.org@localhost>
date:      Thu Nov 02 09:40:29 2017 +0000

description:
py-scipy: updated to 1.0.0

Some of the highlights of this release are:
* Major build improvements. Windows wheels are available on PyPI for the
  first time, and continuous integration has been set up on Windows and OS X
  in addition to Linux.
* A set of new ODE solvers and a unified interface to them
  (scipy.integrate.solve_ivp).
* Two new trust region optimizers and a new linear programming method, with
  improved performance compared to what scipy.optimize offered previously.
  Many new BLAS and LAPACK functions were wrapped. The BLAS wrappers are now
  complete.

diffstat:

 math/py-scipy/Makefile |    5 +-
 math/py-scipy/PLIST    |  149 +++++++++++++++++++++++++++++++++++++++---------
 math/py-scipy/distinfo |   10 +-
 3 files changed, 128 insertions(+), 36 deletions(-)

diffs (truncated from 588 to 300 lines):

diff -r 611afad154b5 -r 8b2d5457cfca math/py-scipy/Makefile
--- a/math/py-scipy/Makefile    Thu Nov 02 09:38:43 2017 +0000
+++ b/math/py-scipy/Makefile    Thu Nov 02 09:40:29 2017 +0000
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.28 2017/09/28 13:49:19 wiz Exp $
+# $NetBSD: Makefile,v 1.29 2017/11/02 09:40:29 adam Exp $
 
-DISTNAME=      scipy-0.19.1
+DISTNAME=      scipy-1.0.0
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
-PKGREVISION=   1
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=s/scipy/}
 
diff -r 611afad154b5 -r 8b2d5457cfca math/py-scipy/PLIST
--- a/math/py-scipy/PLIST       Thu Nov 02 09:38:43 2017 +0000
+++ b/math/py-scipy/PLIST       Thu Nov 02 09:40:29 2017 +0000
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.12 2017/06/24 08:19:40 adam Exp $
+@comment $NetBSD: PLIST,v 1.13 2017/11/02 09:40:29 adam Exp $
 ${PYSITELIB}/${EGG_FILE}/PKG-INFO
 ${PYSITELIB}/${EGG_FILE}/SOURCES.txt
 ${PYSITELIB}/${EGG_FILE}/dependency_links.txt
@@ -20,6 +20,9 @@
 ${PYSITELIB}/scipy/_build_utils/_fortran.py
 ${PYSITELIB}/scipy/_build_utils/_fortran.pyc
 ${PYSITELIB}/scipy/_build_utils/_fortran.pyo
+${PYSITELIB}/scipy/_distributor_init.py
+${PYSITELIB}/scipy/_distributor_init.pyc
+${PYSITELIB}/scipy/_distributor_init.pyo
 ${PYSITELIB}/scipy/_lib/__init__.py
 ${PYSITELIB}/scipy/_lib/__init__.pyc
 ${PYSITELIB}/scipy/_lib/__init__.pyo
@@ -27,6 +30,7 @@
 ${PYSITELIB}/scipy/_lib/_ccallback.pyc
 ${PYSITELIB}/scipy/_lib/_ccallback.pyo
 ${PYSITELIB}/scipy/_lib/_ccallback_c.so
+${PYSITELIB}/scipy/_lib/_fpumode.so
 ${PYSITELIB}/scipy/_lib/_gcutils.py
 ${PYSITELIB}/scipy/_lib/_gcutils.pyc
 ${PYSITELIB}/scipy/_lib/_gcutils.pyo
@@ -52,22 +56,27 @@
 ${PYSITELIB}/scipy/_lib/decorator.py
 ${PYSITELIB}/scipy/_lib/decorator.pyc
 ${PYSITELIB}/scipy/_lib/decorator.pyo
+${PYSITELIB}/scipy/_lib/messagestream.so
 ${PYSITELIB}/scipy/_lib/setup.py
 ${PYSITELIB}/scipy/_lib/setup.pyc
 ${PYSITELIB}/scipy/_lib/setup.pyo
 ${PYSITELIB}/scipy/_lib/six.py
 ${PYSITELIB}/scipy/_lib/six.pyc
 ${PYSITELIB}/scipy/_lib/six.pyo
+${PYSITELIB}/scipy/_lib/tests/__init__.py
 ${PYSITELIB}/scipy/_lib/tests/test__gcutils.py
+${PYSITELIB}/scipy/_lib/tests/test__testutils.py
 ${PYSITELIB}/scipy/_lib/tests/test__threadsafety.py
 ${PYSITELIB}/scipy/_lib/tests/test__util.py
 ${PYSITELIB}/scipy/_lib/tests/test__version.py
 ${PYSITELIB}/scipy/_lib/tests/test_ccallback.py
 ${PYSITELIB}/scipy/_lib/tests/test_tmpdirs.py
+${PYSITELIB}/scipy/_lib/tests/test_warnings.py
 ${PYSITELIB}/scipy/cluster/__init__.py
 ${PYSITELIB}/scipy/cluster/__init__.pyc
 ${PYSITELIB}/scipy/cluster/__init__.pyo
 ${PYSITELIB}/scipy/cluster/_hierarchy.so
+${PYSITELIB}/scipy/cluster/_optimal_leaf_ordering.so
 ${PYSITELIB}/scipy/cluster/_vq.so
 ${PYSITELIB}/scipy/cluster/hierarchy.py
 ${PYSITELIB}/scipy/cluster/hierarchy.pyc
@@ -75,12 +84,16 @@
 ${PYSITELIB}/scipy/cluster/setup.py
 ${PYSITELIB}/scipy/cluster/setup.pyc
 ${PYSITELIB}/scipy/cluster/setup.pyo
+${PYSITELIB}/scipy/cluster/tests/__init__.py
 ${PYSITELIB}/scipy/cluster/tests/hierarchy_test_data.py
 ${PYSITELIB}/scipy/cluster/tests/test_hierarchy.py
 ${PYSITELIB}/scipy/cluster/tests/test_vq.py
 ${PYSITELIB}/scipy/cluster/vq.py
 ${PYSITELIB}/scipy/cluster/vq.pyc
 ${PYSITELIB}/scipy/cluster/vq.pyo
+${PYSITELIB}/scipy/conftest.py
+${PYSITELIB}/scipy/conftest.pyc
+${PYSITELIB}/scipy/conftest.pyo
 ${PYSITELIB}/scipy/constants/__init__.py
 ${PYSITELIB}/scipy/constants/__init__.pyc
 ${PYSITELIB}/scipy/constants/__init__.pyo
@@ -93,6 +106,7 @@
 ${PYSITELIB}/scipy/constants/setup.py
 ${PYSITELIB}/scipy/constants/setup.pyc
 ${PYSITELIB}/scipy/constants/setup.pyo
+${PYSITELIB}/scipy/constants/tests/__init__.py
 ${PYSITELIB}/scipy/constants/tests/test_codata.py
 ${PYSITELIB}/scipy/constants/tests/test_constants.py
 ${PYSITELIB}/scipy/fftpack/__init__.py
@@ -103,9 +117,6 @@
 ${PYSITELIB}/scipy/fftpack/basic.pyc
 ${PYSITELIB}/scipy/fftpack/basic.pyo
 ${PYSITELIB}/scipy/fftpack/convolve.so
-${PYSITELIB}/scipy/fftpack/fftpack_version.py
-${PYSITELIB}/scipy/fftpack/fftpack_version.pyc
-${PYSITELIB}/scipy/fftpack/fftpack_version.pyo
 ${PYSITELIB}/scipy/fftpack/helper.py
 ${PYSITELIB}/scipy/fftpack/helper.pyc
 ${PYSITELIB}/scipy/fftpack/helper.pyo
@@ -119,6 +130,7 @@
 ${PYSITELIB}/scipy/fftpack/setup.pyc
 ${PYSITELIB}/scipy/fftpack/setup.pyo
 ${PYSITELIB}/scipy/fftpack/tests/Makefile
+${PYSITELIB}/scipy/fftpack/tests/__init__.py
 ${PYSITELIB}/scipy/fftpack/tests/fftw_dct.c
 ${PYSITELIB}/scipy/fftpack/tests/fftw_double_ref.npz
 ${PYSITELIB}/scipy/fftpack/tests/fftw_single_ref.npz
@@ -138,6 +150,30 @@
 ${PYSITELIB}/scipy/integrate/_bvp.pyc
 ${PYSITELIB}/scipy/integrate/_bvp.pyo
 ${PYSITELIB}/scipy/integrate/_dop.so
+${PYSITELIB}/scipy/integrate/_ivp/__init__.py
+${PYSITELIB}/scipy/integrate/_ivp/__init__.pyc
+${PYSITELIB}/scipy/integrate/_ivp/__init__.pyo
+${PYSITELIB}/scipy/integrate/_ivp/base.py
+${PYSITELIB}/scipy/integrate/_ivp/base.pyc
+${PYSITELIB}/scipy/integrate/_ivp/base.pyo
+${PYSITELIB}/scipy/integrate/_ivp/bdf.py
+${PYSITELIB}/scipy/integrate/_ivp/bdf.pyc
+${PYSITELIB}/scipy/integrate/_ivp/bdf.pyo
+${PYSITELIB}/scipy/integrate/_ivp/common.py
+${PYSITELIB}/scipy/integrate/_ivp/common.pyc
+${PYSITELIB}/scipy/integrate/_ivp/common.pyo
+${PYSITELIB}/scipy/integrate/_ivp/ivp.py
+${PYSITELIB}/scipy/integrate/_ivp/ivp.pyc
+${PYSITELIB}/scipy/integrate/_ivp/ivp.pyo
+${PYSITELIB}/scipy/integrate/_ivp/lsoda.py
+${PYSITELIB}/scipy/integrate/_ivp/lsoda.pyc
+${PYSITELIB}/scipy/integrate/_ivp/lsoda.pyo
+${PYSITELIB}/scipy/integrate/_ivp/radau.py
+${PYSITELIB}/scipy/integrate/_ivp/radau.pyc
+${PYSITELIB}/scipy/integrate/_ivp/radau.pyo
+${PYSITELIB}/scipy/integrate/_ivp/rk.py
+${PYSITELIB}/scipy/integrate/_ivp/rk.pyc
+${PYSITELIB}/scipy/integrate/_ivp/rk.pyo
 ${PYSITELIB}/scipy/integrate/_ode.py
 ${PYSITELIB}/scipy/integrate/_ode.pyc
 ${PYSITELIB}/scipy/integrate/_ode.pyo
@@ -158,11 +194,13 @@
 ${PYSITELIB}/scipy/integrate/setup.py
 ${PYSITELIB}/scipy/integrate/setup.pyc
 ${PYSITELIB}/scipy/integrate/setup.pyo
+${PYSITELIB}/scipy/integrate/tests/__init__.py
 ${PYSITELIB}/scipy/integrate/tests/_test_multivariate.c
 ${PYSITELIB}/scipy/integrate/tests/banded5x5.f
 ${PYSITELIB}/scipy/integrate/tests/test_banded_ode_solvers.py
 ${PYSITELIB}/scipy/integrate/tests/test_bvp.py
 ${PYSITELIB}/scipy/integrate/tests/test_integrate.py
+${PYSITELIB}/scipy/integrate/tests/test_ivp.py
 ${PYSITELIB}/scipy/integrate/tests/test_odeint_jac.py
 ${PYSITELIB}/scipy/integrate/tests/test_quadpack.py
 ${PYSITELIB}/scipy/integrate/tests/test_quadrature.py
@@ -215,6 +253,7 @@
 ${PYSITELIB}/scipy/interpolate/setup.py
 ${PYSITELIB}/scipy/interpolate/setup.pyc
 ${PYSITELIB}/scipy/interpolate/setup.pyo
+${PYSITELIB}/scipy/interpolate/tests/__init__.py
 ${PYSITELIB}/scipy/interpolate/tests/data/bug-1310.npz
 ${PYSITELIB}/scipy/interpolate/tests/data/estimate_gradients_hang.npy
 ${PYSITELIB}/scipy/interpolate/tests/test_bsplines.py
@@ -235,6 +274,7 @@
 ${PYSITELIB}/scipy/io/_fortran.py
 ${PYSITELIB}/scipy/io/_fortran.pyc
 ${PYSITELIB}/scipy/io/_fortran.pyo
+${PYSITELIB}/scipy/io/_test_fortran.so
 ${PYSITELIB}/scipy/io/arff/__init__.py
 ${PYSITELIB}/scipy/io/arff/__init__.pyc
 ${PYSITELIB}/scipy/io/arff/__init__.pyo
@@ -244,6 +284,7 @@
 ${PYSITELIB}/scipy/io/arff/setup.py
 ${PYSITELIB}/scipy/io/arff/setup.pyc
 ${PYSITELIB}/scipy/io/arff/setup.pyo
+${PYSITELIB}/scipy/io/arff/tests/__init__.py
 ${PYSITELIB}/scipy/io/arff/tests/data/iris.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/missing.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/nodata.arff
@@ -268,6 +309,7 @@
 ${PYSITELIB}/scipy/io/harwell_boeing/setup.py
 ${PYSITELIB}/scipy/io/harwell_boeing/setup.pyc
 ${PYSITELIB}/scipy/io/harwell_boeing/setup.pyo
+${PYSITELIB}/scipy/io/harwell_boeing/tests/__init__.py
 ${PYSITELIB}/scipy/io/harwell_boeing/tests/test_fortran_format.py
 ${PYSITELIB}/scipy/io/harwell_boeing/tests/test_hb.py
 ${PYSITELIB}/scipy/io/idl.py
@@ -300,6 +342,7 @@
 ${PYSITELIB}/scipy/io/matlab/setup.pyc
 ${PYSITELIB}/scipy/io/matlab/setup.pyo
 ${PYSITELIB}/scipy/io/matlab/streams.so
+${PYSITELIB}/scipy/io/matlab/tests/__init__.py
 ${PYSITELIB}/scipy/io/matlab/tests/afunc.m
 ${PYSITELIB}/scipy/io/matlab/tests/data/bad_miuint32.mat
 ${PYSITELIB}/scipy/io/matlab/tests/data/bad_miutf8_array_name.mat
@@ -430,6 +473,7 @@
 ${PYSITELIB}/scipy/io/setup.py
 ${PYSITELIB}/scipy/io/setup.pyc
 ${PYSITELIB}/scipy/io/setup.pyo
+${PYSITELIB}/scipy/io/tests/__init__.py
 ${PYSITELIB}/scipy/io/tests/data/array_float32_1d.sav
 ${PYSITELIB}/scipy/io/tests/data/array_float32_2d.sav
 ${PYSITELIB}/scipy/io/tests/data/array_float32_3d.sav
@@ -449,19 +493,20 @@
 ${PYSITELIB}/scipy/io/tests/data/example_1.nc
 ${PYSITELIB}/scipy/io/tests/data/example_2.nc
 ${PYSITELIB}/scipy/io/tests/data/example_3_maskedvals.nc
+${PYSITELIB}/scipy/io/tests/data/fortran-3x3d-2i.dat
 ${PYSITELIB}/scipy/io/tests/data/fortran-mixed.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-sf8-10x1x11.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-sf8-11x1x10.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-sf8-15x10x22.dat
 ${PYSITELIB}/scipy/io/tests/data/fortran-sf8-1x1x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-sf8-22x10x15.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-sf8-5x1x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-sf8-5x3x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-sf8-7x1x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-si4-10x1x11.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-sf8-1x1x5.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-sf8-1x1x7.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-sf8-1x3x5.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-si4-11x1x10.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-si4-15x10x22.dat
 ${PYSITELIB}/scipy/io/tests/data/fortran-si4-1x1x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-si4-22x10x15.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-si4-5x1x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-si4-5x3x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-si4-7x1x1.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-si4-1x1x5.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-si4-1x1x7.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-si4-1x3x5.dat
 ${PYSITELIB}/scipy/io/tests/data/invalid_pointer.sav
 ${PYSITELIB}/scipy/io/tests/data/null_pointer.sav
 ${PYSITELIB}/scipy/io/tests/data/scalar_byte.sav
@@ -504,6 +549,7 @@
 ${PYSITELIB}/scipy/io/tests/test_idl.py
 ${PYSITELIB}/scipy/io/tests/test_mmio.py
 ${PYSITELIB}/scipy/io/tests/test_netcdf.py
+${PYSITELIB}/scipy/io/tests/test_paths.py
 ${PYSITELIB}/scipy/io/tests/test_wavfile.py
 ${PYSITELIB}/scipy/io/wavfile.py
 ${PYSITELIB}/scipy/io/wavfile.pyc
@@ -512,13 +558,9 @@
 ${PYSITELIB}/scipy/linalg/__init__.py
 ${PYSITELIB}/scipy/linalg/__init__.pyc
 ${PYSITELIB}/scipy/linalg/__init__.pyo
-${PYSITELIB}/scipy/linalg/_calc_lwork.so
 ${PYSITELIB}/scipy/linalg/_cython_signature_generator.py
 ${PYSITELIB}/scipy/linalg/_cython_signature_generator.pyc
 ${PYSITELIB}/scipy/linalg/_cython_signature_generator.pyo
-${PYSITELIB}/scipy/linalg/_cython_wrapper_generators.py
-${PYSITELIB}/scipy/linalg/_cython_wrapper_generators.pyc
-${PYSITELIB}/scipy/linalg/_cython_wrapper_generators.pyo
 ${PYSITELIB}/scipy/linalg/_decomp_polar.py
 ${PYSITELIB}/scipy/linalg/_decomp_polar.pyc
 ${PYSITELIB}/scipy/linalg/_decomp_polar.pyo
@@ -532,6 +574,9 @@
 ${PYSITELIB}/scipy/linalg/_fblas.so
 ${PYSITELIB}/scipy/linalg/_flapack.so
 ${PYSITELIB}/scipy/linalg/_flinalg.so
+${PYSITELIB}/scipy/linalg/_generate_pyx.py
+${PYSITELIB}/scipy/linalg/_generate_pyx.pyc
+${PYSITELIB}/scipy/linalg/_generate_pyx.pyo
 ${PYSITELIB}/scipy/linalg/_interpolative.so
 ${PYSITELIB}/scipy/linalg/_interpolative_backend.py
 ${PYSITELIB}/scipy/linalg/_interpolative_backend.pyc
@@ -545,6 +590,9 @@
 ${PYSITELIB}/scipy/linalg/_procrustes.py
 ${PYSITELIB}/scipy/linalg/_procrustes.pyc
 ${PYSITELIB}/scipy/linalg/_procrustes.pyo
+${PYSITELIB}/scipy/linalg/_sketches.py
+${PYSITELIB}/scipy/linalg/_sketches.pyc
+${PYSITELIB}/scipy/linalg/_sketches.pyo
 ${PYSITELIB}/scipy/linalg/_solve_toeplitz.so
 ${PYSITELIB}/scipy/linalg/_solvers.py
 ${PYSITELIB}/scipy/linalg/_solvers.pyc
@@ -558,9 +606,6 @@
 ${PYSITELIB}/scipy/linalg/blas.py
 ${PYSITELIB}/scipy/linalg/blas.pyc
 ${PYSITELIB}/scipy/linalg/blas.pyo
-${PYSITELIB}/scipy/linalg/calc_lwork.py
-${PYSITELIB}/scipy/linalg/calc_lwork.pyc
-${PYSITELIB}/scipy/linalg/calc_lwork.pyo
 ${PYSITELIB}/scipy/linalg/cython_blas.pxd
 ${PYSITELIB}/scipy/linalg/cython_blas.so
 ${PYSITELIB}/scipy/linalg/cython_lapack.pxd
@@ -607,6 +652,9 @@
 ${PYSITELIB}/scipy/linalg/special_matrices.py
 ${PYSITELIB}/scipy/linalg/special_matrices.pyc
 ${PYSITELIB}/scipy/linalg/special_matrices.pyo
+${PYSITELIB}/scipy/linalg/src/id_dist/doc/doc.tex
+${PYSITELIB}/scipy/linalg/src/lapack_deprecations/LICENSE
+${PYSITELIB}/scipy/linalg/tests/__init__.py
 ${PYSITELIB}/scipy/linalg/tests/data/carex_15_data.npz
 ${PYSITELIB}/scipy/linalg/tests/data/carex_18_data.npz
 ${PYSITELIB}/scipy/linalg/tests/data/carex_19_data.npz
@@ -627,6 +675,7 @@
 ${PYSITELIB}/scipy/linalg/tests/test_lapack.py