pkgsrc-WIP-changes archive

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index][Old Index]

atac-seq: Add py-macs3 dep to metapackage



Module Name:	pkgsrc-wip
Committed By:	Jason W. Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Wed Jan 10 10:03:04 2024 -0600
Changeset:	4a6be708130edc6e01fdebb97b09b9610d46cb35

Modified Files:
	atac-seq/DESCR
	atac-seq/Makefile

Log Message:
atac-seq: Add py-macs3 dep to metapackage

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=4a6be708130edc6e01fdebb97b09b9610d46cb35

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 atac-seq/DESCR    | 11 ++++++-----
 atac-seq/Makefile |  3 ++-
 2 files changed, 8 insertions(+), 6 deletions(-)

diffs:
diff --git a/atac-seq/DESCR b/atac-seq/DESCR
index db4c38bb11..286ab0c22e 100644
--- a/atac-seq/DESCR
+++ b/atac-seq/DESCR
@@ -1,5 +1,6 @@
-The atac-seq meta-package provides the core tools needed for performing
-a typical ATAC-Seq differential accessibility analysis, including
-adapter trimming, quality control, alignment, peak calling, and
-identification of differentially accessible peaks.  Researchers may
-want additional tools for data manipulation, gene ontology, etc.
+The atac-seq meta-package provides the core tools needed for
+performing a typical ATAC-Seq differential accessibility analysis,
+including adapter trimming, quality control, alignment, peak calling,
+and identification of differentially accessible peaks.  Researchers
+may want additional tools for data manipulation, gene ontology,
+etc.
diff --git a/atac-seq/Makefile b/atac-seq/Makefile
index 4bdbc0c7a9..5c066173d5 100644
--- a/atac-seq/Makefile
+++ b/atac-seq/Makefile
@@ -3,7 +3,7 @@
 
 # Update minor version when adding or removing dependencies
 # Update revision for all other changes
-DISTNAME=	atac-seq-1.3
+DISTNAME=	atac-seq-1.4
 CATEGORIES=	biology meta-pkgs
 MASTER_SITES=	# empty
 
@@ -20,6 +20,7 @@ DEPENDS+=	bowtie2>0:../../biology/bowtie2
 DEPENDS+=	samtools>0:../../biology/samtools
 DEPENDS+=	igv>0:../../biology/igv
 DEPENDS+=	${PYPKGPREFIX}-macs2>0:../../wip/py-macs2
+DEPENDS+=	${PYPKGPREFIX}-macs3>0:../../wip/py-macs3
 DEPENDS+=	fasda>0:../../wip/fasda
 DEPENDS+=	peak-classifier>0:../../wip/peak-classifier
 DEPENDS+=	${PYPKGPREFIX}-multiqc-[0-9]*:../../wip/py-multiqc


Home | Main Index | Thread Index | Old Index