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biolibc-tools: Update to 0.1.0.47
Module Name: pkgsrc-wip
Committed By: Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Mon Oct 25 09:27:08 2021 -0500
Changeset: c505dd83e3f79c250e0c7fc799d6d87b65b2301e
Modified Files:
biolibc-tools/Makefile
biolibc-tools/PLIST
biolibc-tools/distinfo
Log Message:
biolibc-tools: Update to 0.1.0.47
fasta2seq: Convert FASTA file to a continuous sequence
find-orfs: Find start and stop codons in a sequence
vcf-search: Search a VCF file (just chr and pos for now)
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=c505dd83e3f79c250e0c7fc799d6d87b65b2301e
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
biolibc-tools/Makefile | 4 ++--
biolibc-tools/PLIST | 3 +++
biolibc-tools/distinfo | 6 +++---
3 files changed, 8 insertions(+), 5 deletions(-)
diffs:
diff --git a/biolibc-tools/Makefile b/biolibc-tools/Makefile
index 5105ba3dd7..2dca85345f 100644
--- a/biolibc-tools/Makefile
+++ b/biolibc-tools/Makefile
@@ -1,9 +1,9 @@
# $NetBSD$
-DISTNAME= biolibc-tools-0.1.0.46
+DISTNAME= biolibc-tools-0.1.0.47
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG= e9c6ea04e4bf5144c6b6c6d5c3fd6ec54775311d
+GITHUB_TAG= 9b89547f97ceb11b6278db424f82862aa56b4523
MAINTAINER= bacon%NetBSD.org@localhost
HOMEPAGE= https://github.com/auerlab/biolibc-tools
diff --git a/biolibc-tools/PLIST b/biolibc-tools/PLIST
index 5d61e51f85..6d5152042e 100644
--- a/biolibc-tools/PLIST
+++ b/biolibc-tools/PLIST
@@ -1,9 +1,12 @@
@comment $NetBSD$
bin/blt
+libexec/biolibc-tools/fasta2seq
libexec/biolibc-tools/fastq-derep.sh
libexec/biolibc-tools/fastx-derep
libexec/biolibc-tools/fastx2tsv
+libexec/biolibc-tools/find-orfs
libexec/biolibc-tools/uniq-seqs.awk
+libexec/biolibc-tools/vcf-search
man/man1/blt-fastq-derep.sh.1
man/man1/blt-fastx-derep.1
man/man1/blt-fastx2tsv.1
diff --git a/biolibc-tools/distinfo b/biolibc-tools/distinfo
index 7210bba5e9..8e36d88663 100644
--- a/biolibc-tools/distinfo
+++ b/biolibc-tools/distinfo
@@ -1,5 +1,5 @@
$NetBSD$
-RMD160 (biolibc-tools-0.1.0.46-e9c6ea04e4bf5144c6b6c6d5c3fd6ec54775311d.tar.gz) = 454f15151a41f6f6aaea1b955fa8fbb6b51ab229
-SHA512 (biolibc-tools-0.1.0.46-e9c6ea04e4bf5144c6b6c6d5c3fd6ec54775311d.tar.gz) = ddee27964d7ea3929d38c2887432f6a2f9d9a3aa3106b3bd3f16265fea7082d44f6765b5faad2ed23447b977e387164fabdcefad6595d9522dc6143a61cedbd5
-Size (biolibc-tools-0.1.0.46-e9c6ea04e4bf5144c6b6c6d5c3fd6ec54775311d.tar.gz) = 12832 bytes
+RMD160 (biolibc-tools-0.1.0.47-9b89547f97ceb11b6278db424f82862aa56b4523.tar.gz) = 9e36625ca193a50842241ab184ee5d61f4ab9b25
+SHA512 (biolibc-tools-0.1.0.47-9b89547f97ceb11b6278db424f82862aa56b4523.tar.gz) = cb690591d72650b96f4ab97bc209d7889d3fef195432757678e1f58ba42042ec5dbc34380546534b3db176c8833aea9b73fcafd1af71dae10ec265686e1e1fd3
+Size (biolibc-tools-0.1.0.47-9b89547f97ceb11b6278db424f82862aa56b4523.tar.gz) = 18219 bytes
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