trinity: Remove absolute path to jellyfish from plugin script

[Jason Bacon <jwbacon%tds.net@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <jwbacon%tds.net@localhost>
Pushed By:	outpaddling
Date:		Wed Jan 20 13:09:15 2016 -0600
Changeset:	3486cde532e9e120c827ff8b4bc71bf404f5d451

Modified Files:
	trinity/Makefile

Log Message:
trinity: Remove absolute path to jellyfish from plugin script

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=3486cde532e9e120c827ff8b4bc71bf404f5d451

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 trinity/Makefile | 7 +++++++
 1 file changed, 7 insertions(+)

diffs:
diff --git a/trinity/Makefile b/trinity/Makefile
index 756699eee..14bc1df 100644
--- a/trinity/Makefile
+++ b/trinity/Makefile
@@ -76,6 +76,13 @@ SUBST_FILES.plugins=	${WRKSRC}/Trinity
 SUBST_SED.plugins=	-e 's|$$ROOTDIR/trinity-plugins/jellyfish|${PREFIX}|g' \
 			-e 's|$$ROOTDIR/trinity-plugins/parafly|${PREFIX}|g'
 
+SUBST_CLASSES+=		util
+SUBST_STAGE.util=	post-patch
+SUBST_FILES.util=	${WRKSRC}/util/insilico_read_normalization.pl
+SUBST_SED.util= \
+		-e 's|$$ROOTDIR/trinity-plugins/jellyfish|${LOCALBASE}|g' \
+		-e 's|$$ROOTDIR/trinity-plugins/fastool|${LOCALBASE}/bin|g'
+
 SUBST_CLASSES+=		make
 SUBST_STAGE.make=	post-patch
 SUBST_FILES.make=	${WRKSRC}/trinity-plugins/collectl/build_collectl.sh