Re: CVS commit: pkgsrc/math/R-sp

[Thomas Klausner <wiz%NetBSD.org@localhost>]

On Tue, Feb 18, 2025 at 09:44:01AM +0100, Thomas Klausner wrote:
> On Sat, Feb 15, 2025 at 06:22:57AM +0000, Makoto Fujiwara wrote:
> > Module Name:	pkgsrc
> > Committed By:	mef
> > Date:		Sat Feb 15 06:22:57 UTC 2025
> > 
> > Modified Files:
> > 	pkgsrc/math/R-sp: Makefile distinfo
> > 
> > Log Message:
> > (math/R-sp) Updated 2.1.4 to 2.2.0
> > 
> > Changes in version 2.2-0 (2024-xx-yy):
> > 
> >          remove exporting C symbols previously used by rgdal and rgeos
> 
> This breaks the build of R-rgeos, because the header sp.h is not
> installed any longer.
> 
> The R-rgeos homepage
> (https://cran.r-project.org/web/packages/rgeos/index.html) says that:
> 
> "Package ‘rgeos’ was removed from the CRAN repository.
> ...
> Archived on 2023-10-16 at the request of the maintainer. Consider using 'sf' or 'terra' instead."
> 
> but pkgsrc still uses it in a couple other packages (some of the
> dependencies look questionable to me, e.g. the one by R-sf if that's a
> replacement for R-rgeos):
> 
> geography/R-maptools/Makefile:TEST_DEPENDS+=  R-rgeos-[0-9]*:../../geography/R-rgeos
> geography/R-rgdal/Makefile:TEST_DEPENDS+=     R-rgeos-[0-9]*:../../geography/R-rgeos
> geography/R-sf/Makefile:DEPENDS+=     R-rgeos>=0.5.2:../../geography/R-rgeos
> graphics/R-ggplot2/Makefile:TEST_DEPENDS+=    R-rgeos-[0-9]*:../../geography/R-rgeos
> math/R-broom/Makefile:TEST_DEPENDS+=  R-rgeos-[0-9]*:../../geography/R-rgeos
> math/R-gstat/Makefile:TEST_DEPENDS+=  R-rgeos-[0-9]*:../../geography/R-rgeos
> math/R-sp/Makefile:TEST_DEPENDS+=     R-rgeos-[0-9]*:../../geography/R-rgeos
> math/R-spacetime/Makefile:TEST_DEPENDS+=      R-rgeos-[0-9]*:../../geography/R-rgeos
> 
> Please fix this.

Not surprisingly, reading the changelog, R-rgdal is also broken:
http://shadow.netbsd.org/pub/pkgsrc/packages/reports/HEAD/NetBSD-10.0-x86_64/20250216.2008/R-rgdal-1.6.7nb12/install.log

Its homepage has basically the same text:
"Package ‘rgdal’ was removed from the CRAN repository.
...
Archived on 2023-10-16 at the request of the maintainer. Consider using 'sf' or 'terra' instead."

and it has a similar list of dependencies:
geography/R-prettymapr/Makefile:TEST_DEPENDS+=        R-rgdal-[0-9]*:../../geography/R-rgdal
geography/R-rgeos/Makefile:TEST_DEPENDS+=     R-rgdal-[0-9]*:../../geography/R-rgdal
geography/R-sf/Makefile:TEST_DEPENDS+=        R-rgdal-[0-9]*:../../geography/R-rgdal
math/R-gstat/Makefile:TEST_DEPENDS+=  R-rgdal-[0-9]*:../../geography/R-rgdal
math/R-sp/Makefile:TEST_DEPENDS+=     R-rgdal-[0-9]*:../../geography/R-rgdal
math/R-spacetime/Makefile:TEST_DEPENDS+=      R-rgdal-[0-9]*:../../geography/R-rgdal

 Thomas