I'm really not sure what's going on.
Two thoughts:
* Are you really sure you have
- a consistent tree, all cvs up -A
- no stale workdirs
- everything up to date?
* Partial PREFER_PKGSRC considered harmful
If you are going to prefer_pkgsrc for something, you should do that
for everything that depends on it. Yes, it ought to warn if you
don't.
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