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[pkgsrc/trunk]: pkgsrc/math/py-scipy py-scipy: update to 1.5.2
details: https://anonhg.NetBSD.org/pkgsrc/rev/95303c2d6fd6
branches: trunk
changeset: 436520:95303c2d6fd6
user: tnn <tnn%pkgsrc.org@localhost>
date: Tue Aug 04 01:16:19 2020 +0000
description:
py-scipy: update to 1.5.2
Done to fix build w/ gfortran 10. "make test" was mostly OK except for
three tests that returned nan where inf was expected ...
Highlights of this release:
wrappers for more than a dozen new LAPACK routines are now available
in scipy.linalg.lapack
Improved support for leveraging 64-bit integer size from linear algebra
backends
addition of the probability distribution for two-sided one-sample
Kolmogorov-Smirnov tests
New features:
Too many; see release notes at github.
Backwards incompatible changes:
The output signatures of ?syevr, ?heevr have been changed from
w, v, info to w, v, m, isuppz, info
The order of output arguments w, v of <sy/he>{gv, gvd, gvx} is
swapped.
The output length of scipy.signal.upfirdn has been corrected, resulting
outputs may now be shorter for some combinations of up/down ratios and
input signal and filter lengths.
scipy.signal.resample now supports a domain keyword argument for
specification of time or frequency domain input.
diffstat:
math/py-scipy/Makefile | 4 +-
math/py-scipy/PLIST | 77 ++++++++++++++++++++++++++++++-------------------
math/py-scipy/distinfo | 10 +++---
3 files changed, 54 insertions(+), 37 deletions(-)
diffs (truncated from 331 to 300 lines):
diff -r c89f116cffc0 -r 95303c2d6fd6 math/py-scipy/Makefile
--- a/math/py-scipy/Makefile Tue Aug 04 01:14:36 2020 +0000
+++ b/math/py-scipy/Makefile Tue Aug 04 01:16:19 2020 +0000
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.41 2020/04/28 09:45:27 adam Exp $
+# $NetBSD: Makefile,v 1.42 2020/08/04 01:16:19 tnn Exp $
-DISTNAME= scipy-1.4.1
+DISTNAME= scipy-1.5.2
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
CATEGORIES= math python
MASTER_SITES= ${MASTER_SITE_PYPI:=s/scipy/}
diff -r c89f116cffc0 -r 95303c2d6fd6 math/py-scipy/PLIST
--- a/math/py-scipy/PLIST Tue Aug 04 01:14:36 2020 +0000
+++ b/math/py-scipy/PLIST Tue Aug 04 01:16:19 2020 +0000
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.16 2020/04/28 09:45:27 adam Exp $
+@comment $NetBSD: PLIST,v 1.17 2020/08/04 01:16:19 tnn Exp $
${PYSITELIB}/${EGG_FILE}/PKG-INFO
${PYSITELIB}/${EGG_FILE}/SOURCES.txt
${PYSITELIB}/${EGG_FILE}/dependency_links.txt
@@ -45,13 +45,12 @@
${PYSITELIB}/scipy/_lib/_gcutils.py
${PYSITELIB}/scipy/_lib/_gcutils.pyc
${PYSITELIB}/scipy/_lib/_gcutils.pyo
-${PYSITELIB}/scipy/_lib/_numpy_compat.py
-${PYSITELIB}/scipy/_lib/_numpy_compat.pyc
-${PYSITELIB}/scipy/_lib/_numpy_compat.pyo
${PYSITELIB}/scipy/_lib/_pep440.py
${PYSITELIB}/scipy/_lib/_pep440.pyc
${PYSITELIB}/scipy/_lib/_pep440.pyo
${PYSITELIB}/scipy/_lib/_test_ccallback.so
+${PYSITELIB}/scipy/_lib/_test_deprecation_call.so
+${PYSITELIB}/scipy/_lib/_test_deprecation_def.so
${PYSITELIB}/scipy/_lib/_testutils.py
${PYSITELIB}/scipy/_lib/_testutils.pyc
${PYSITELIB}/scipy/_lib/_testutils.pyo
@@ -75,9 +74,6 @@
${PYSITELIB}/scipy/_lib/_util.py
${PYSITELIB}/scipy/_lib/_util.pyc
${PYSITELIB}/scipy/_lib/_util.pyo
-${PYSITELIB}/scipy/_lib/_version.py
-${PYSITELIB}/scipy/_lib/_version.pyc
-${PYSITELIB}/scipy/_lib/_version.pyo
${PYSITELIB}/scipy/_lib/decorator.py
${PYSITELIB}/scipy/_lib/decorator.pyc
${PYSITELIB}/scipy/_lib/decorator.pyo
@@ -91,16 +87,14 @@
${PYSITELIB}/scipy/_lib/setup.py
${PYSITELIB}/scipy/_lib/setup.pyc
${PYSITELIB}/scipy/_lib/setup.pyo
-${PYSITELIB}/scipy/_lib/six.py
-${PYSITELIB}/scipy/_lib/six.pyc
-${PYSITELIB}/scipy/_lib/six.pyo
${PYSITELIB}/scipy/_lib/tests/__init__.py
${PYSITELIB}/scipy/_lib/tests/test__gcutils.py
+${PYSITELIB}/scipy/_lib/tests/test__pep440.py
${PYSITELIB}/scipy/_lib/tests/test__testutils.py
${PYSITELIB}/scipy/_lib/tests/test__threadsafety.py
${PYSITELIB}/scipy/_lib/tests/test__util.py
-${PYSITELIB}/scipy/_lib/tests/test__version.py
${PYSITELIB}/scipy/_lib/tests/test_ccallback.py
+${PYSITELIB}/scipy/_lib/tests/test_deprecation.py
${PYSITELIB}/scipy/_lib/tests/test_import_cycles.py
${PYSITELIB}/scipy/_lib/tests/test_tmpdirs.py
${PYSITELIB}/scipy/_lib/tests/test_warnings.py
@@ -268,6 +262,9 @@
${PYSITELIB}/scipy/integrate/_quad_vec.pyc
${PYSITELIB}/scipy/integrate/_quad_vec.pyo
${PYSITELIB}/scipy/integrate/_quadpack.so
+${PYSITELIB}/scipy/integrate/_quadrature.py
+${PYSITELIB}/scipy/integrate/_quadrature.pyc
+${PYSITELIB}/scipy/integrate/_quadrature.pyo
${PYSITELIB}/scipy/integrate/_test_multivariate.so
${PYSITELIB}/scipy/integrate/_test_odeint_banded.so
${PYSITELIB}/scipy/integrate/lsoda.so
@@ -277,9 +274,6 @@
${PYSITELIB}/scipy/integrate/quadpack.py
${PYSITELIB}/scipy/integrate/quadpack.pyc
${PYSITELIB}/scipy/integrate/quadpack.pyo
-${PYSITELIB}/scipy/integrate/quadrature.py
-${PYSITELIB}/scipy/integrate/quadrature.pyc
-${PYSITELIB}/scipy/integrate/quadrature.pyo
${PYSITELIB}/scipy/integrate/setup.py
${PYSITELIB}/scipy/integrate/setup.pyc
${PYSITELIB}/scipy/integrate/setup.pyo
@@ -505,6 +499,7 @@
${PYSITELIB}/scipy/io/matlab/tests/data/testonechar_7.1_GLNX86.mat
${PYSITELIB}/scipy/io/matlab/tests/data/testonechar_7.4_GLNX86.mat
${PYSITELIB}/scipy/io/matlab/tests/data/testscalarcell_7.4_GLNX86.mat
+${PYSITELIB}/scipy/io/matlab/tests/data/testsimplecell.mat
${PYSITELIB}/scipy/io/matlab/tests/data/testsparse_4.2c_SOL2.mat
${PYSITELIB}/scipy/io/matlab/tests/data/testsparse_6.1_SOL2.mat
${PYSITELIB}/scipy/io/matlab/tests/data/testsparse_6.5.1_GLNX86.mat
@@ -562,6 +557,7 @@
${PYSITELIB}/scipy/io/setup.pyc
${PYSITELIB}/scipy/io/setup.pyo
${PYSITELIB}/scipy/io/tests/__init__.py
+${PYSITELIB}/scipy/io/tests/data/Transparent Busy.ani
${PYSITELIB}/scipy/io/tests/data/array_float32_1d.sav
${PYSITELIB}/scipy/io/tests/data/array_float32_2d.sav
${PYSITELIB}/scipy/io/tests/data/array_float32_3d.sav
@@ -632,6 +628,7 @@
${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-incomplete-chunk.wav
${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes.wav
${PYSITELIB}/scipy/io/tests/data/test-48000Hz-2ch-64bit-float-le-wavex.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-1ch-1byte-ulaw.wav
${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-2ch-1byteu.wav
${PYSITELIB}/scipy/io/tests/data/various_compressed.sav
${PYSITELIB}/scipy/io/tests/test_fortran.py
@@ -650,6 +647,9 @@
${PYSITELIB}/scipy/linalg/_cython_signature_generator.py
${PYSITELIB}/scipy/linalg/_cython_signature_generator.pyc
${PYSITELIB}/scipy/linalg/_cython_signature_generator.pyo
+${PYSITELIB}/scipy/linalg/_decomp_cossin.py
+${PYSITELIB}/scipy/linalg/_decomp_cossin.pyc
+${PYSITELIB}/scipy/linalg/_decomp_cossin.pyo
${PYSITELIB}/scipy/linalg/_decomp_ldl.py
${PYSITELIB}/scipy/linalg/_decomp_ldl.pyc
${PYSITELIB}/scipy/linalg/_decomp_ldl.pyo
@@ -729,9 +729,6 @@
${PYSITELIB}/scipy/linalg/lapack.py
${PYSITELIB}/scipy/linalg/lapack.pyc
${PYSITELIB}/scipy/linalg/lapack.pyo
-${PYSITELIB}/scipy/linalg/linalg_version.py
-${PYSITELIB}/scipy/linalg/linalg_version.pyc
-${PYSITELIB}/scipy/linalg/linalg_version.pyo
${PYSITELIB}/scipy/linalg/matfuncs.py
${PYSITELIB}/scipy/linalg/matfuncs.pyc
${PYSITELIB}/scipy/linalg/matfuncs.pyo
@@ -760,6 +757,7 @@
${PYSITELIB}/scipy/linalg/tests/test_cython_lapack.py
${PYSITELIB}/scipy/linalg/tests/test_decomp.py
${PYSITELIB}/scipy/linalg/tests/test_decomp_cholesky.py
+${PYSITELIB}/scipy/linalg/tests/test_decomp_cossin.py
${PYSITELIB}/scipy/linalg/tests/test_decomp_ldl.py
${PYSITELIB}/scipy/linalg/tests/test_decomp_polar.py
${PYSITELIB}/scipy/linalg/tests/test_decomp_update.py
@@ -790,6 +788,7 @@
${PYSITELIB}/scipy/misc/tests/__init__.py
${PYSITELIB}/scipy/misc/tests/test_common.py
${PYSITELIB}/scipy/misc/tests/test_doccer.py
+${PYSITELIB}/scipy/mypy_requirements.txt
${PYSITELIB}/scipy/ndimage/__init__.py
${PYSITELIB}/scipy/ndimage/__init__.pyc
${PYSITELIB}/scipy/ndimage/__init__.pyo
@@ -840,9 +839,9 @@
${PYSITELIB}/scipy/odr/__init__.pyc
${PYSITELIB}/scipy/odr/__init__.pyo
${PYSITELIB}/scipy/odr/__odrpack.so
-${PYSITELIB}/scipy/odr/add_newdocs.py
-${PYSITELIB}/scipy/odr/add_newdocs.pyc
-${PYSITELIB}/scipy/odr/add_newdocs.pyo
+${PYSITELIB}/scipy/odr/_add_newdocs.py
+${PYSITELIB}/scipy/odr/_add_newdocs.pyc
+${PYSITELIB}/scipy/odr/_add_newdocs.pyo
${PYSITELIB}/scipy/odr/models.py
${PYSITELIB}/scipy/odr/models.pyc
${PYSITELIB}/scipy/odr/models.pyo
@@ -858,6 +857,7 @@
${PYSITELIB}/scipy/optimize/__init__.py
${PYSITELIB}/scipy/optimize/__init__.pyc
${PYSITELIB}/scipy/optimize/__init__.pyo
+${PYSITELIB}/scipy/optimize/__nnls.so
${PYSITELIB}/scipy/optimize/_basinhopping.py
${PYSITELIB}/scipy/optimize/_basinhopping.pyc
${PYSITELIB}/scipy/optimize/_basinhopping.pyo
@@ -931,7 +931,9 @@
${PYSITELIB}/scipy/optimize/_minimize.pyc
${PYSITELIB}/scipy/optimize/_minimize.pyo
${PYSITELIB}/scipy/optimize/_minpack.so
-${PYSITELIB}/scipy/optimize/_nnls.so
+${PYSITELIB}/scipy/optimize/_nnls.py
+${PYSITELIB}/scipy/optimize/_nnls.pyc
+${PYSITELIB}/scipy/optimize/_nnls.pyo
${PYSITELIB}/scipy/optimize/_numdiff.py
${PYSITELIB}/scipy/optimize/_numdiff.pyc
${PYSITELIB}/scipy/optimize/_numdiff.pyo
@@ -1041,9 +1043,6 @@
${PYSITELIB}/scipy/optimize/minpack.pyo
${PYSITELIB}/scipy/optimize/minpack2.so
${PYSITELIB}/scipy/optimize/moduleTNC.so
-${PYSITELIB}/scipy/optimize/nnls.py
-${PYSITELIB}/scipy/optimize/nnls.pyc
-${PYSITELIB}/scipy/optimize/nnls.pyo
${PYSITELIB}/scipy/optimize/nonlin.py
${PYSITELIB}/scipy/optimize/nonlin.pyc
${PYSITELIB}/scipy/optimize/nonlin.pyo
@@ -1073,6 +1072,7 @@
${PYSITELIB}/scipy/optimize/tests/test_differentiable_functions.py
${PYSITELIB}/scipy/optimize/tests/test_hessian_update_strategy.py
${PYSITELIB}/scipy/optimize/tests/test_lbfgsb_hessinv.py
+${PYSITELIB}/scipy/optimize/tests/test_lbfgsb_setulb.py
${PYSITELIB}/scipy/optimize/tests/test_least_squares.py
${PYSITELIB}/scipy/optimize/tests/test_linear_assignment.py
${PYSITELIB}/scipy/optimize/tests/test_linesearch.py
@@ -1400,6 +1400,9 @@
${PYSITELIB}/scipy/spatial/__init__.pyc
${PYSITELIB}/scipy/spatial/__init__.pyo
${PYSITELIB}/scipy/spatial/_distance_wrap.so
+${PYSITELIB}/scipy/spatial/_geometric_slerp.py
+${PYSITELIB}/scipy/spatial/_geometric_slerp.pyc
+${PYSITELIB}/scipy/spatial/_geometric_slerp.pyo
${PYSITELIB}/scipy/spatial/_hausdorff.so
${PYSITELIB}/scipy/spatial/_plotutils.py
${PYSITELIB}/scipy/spatial/_plotutils.pyc
@@ -1410,7 +1413,9 @@
${PYSITELIB}/scipy/spatial/_spherical_voronoi.py
${PYSITELIB}/scipy/spatial/_spherical_voronoi.pyc
${PYSITELIB}/scipy/spatial/_spherical_voronoi.pyo
+${PYSITELIB}/scipy/spatial/_voronoi.pyi
${PYSITELIB}/scipy/spatial/_voronoi.so
+${PYSITELIB}/scipy/spatial/ckdtree.pyi
${PYSITELIB}/scipy/spatial/ckdtree.so
${PYSITELIB}/scipy/spatial/distance.py
${PYSITELIB}/scipy/spatial/distance.pyc
@@ -1461,6 +1466,7 @@
${PYSITELIB}/scipy/spatial/tests/test_hausdorff.py
${PYSITELIB}/scipy/spatial/tests/test_kdtree.py
${PYSITELIB}/scipy/spatial/tests/test_qhull.py
+${PYSITELIB}/scipy/spatial/tests/test_slerp.py
${PYSITELIB}/scipy/spatial/tests/test_spherical_voronoi.py
${PYSITELIB}/scipy/spatial/transform/__init__.py
${PYSITELIB}/scipy/spatial/transform/__init__.pyc
@@ -1496,6 +1502,9 @@
${PYSITELIB}/scipy/special/_generate_pyx.py
${PYSITELIB}/scipy/special/_generate_pyx.pyc
${PYSITELIB}/scipy/special/_generate_pyx.pyo
+${PYSITELIB}/scipy/special/_lambertw.py
+${PYSITELIB}/scipy/special/_lambertw.pyc
+${PYSITELIB}/scipy/special/_lambertw.pyo
${PYSITELIB}/scipy/special/_logsumexp.py
${PYSITELIB}/scipy/special/_logsumexp.pyc
${PYSITELIB}/scipy/special/_logsumexp.pyo
@@ -1538,10 +1547,12 @@
${PYSITELIB}/scipy/special/_spherical_bessel.py
${PYSITELIB}/scipy/special/_spherical_bessel.pyc
${PYSITELIB}/scipy/special/_spherical_bessel.pyo
+${PYSITELIB}/scipy/special/_test_round.pyi
${PYSITELIB}/scipy/special/_test_round.so
${PYSITELIB}/scipy/special/_testutils.py
${PYSITELIB}/scipy/special/_testutils.pyc
${PYSITELIB}/scipy/special/_testutils.pyo
+${PYSITELIB}/scipy/special/_ufuncs.pyi
${PYSITELIB}/scipy/special/_ufuncs.so
${PYSITELIB}/scipy/special/_ufuncs_cxx.so
${PYSITELIB}/scipy/special/add_newdocs.py
@@ -1551,12 +1562,11 @@
${PYSITELIB}/scipy/special/basic.pyc
${PYSITELIB}/scipy/special/basic.pyo
${PYSITELIB}/scipy/special/cython_special.pxd
+${PYSITELIB}/scipy/special/cython_special.pyi
${PYSITELIB}/scipy/special/cython_special.so
-${PYSITELIB}/scipy/special/lambertw.py
-${PYSITELIB}/scipy/special/lambertw.pyc
-${PYSITELIB}/scipy/special/lambertw.pyo
${PYSITELIB}/scipy/special/orthogonal.py
${PYSITELIB}/scipy/special/orthogonal.pyc
+${PYSITELIB}/scipy/special/orthogonal.pyi
${PYSITELIB}/scipy/special/orthogonal.pyo
${PYSITELIB}/scipy/special/setup.py
${PYSITELIB}/scipy/special/setup.pyc
@@ -1574,18 +1584,22 @@
${PYSITELIB}/scipy/special/tests/data/gsl.npz
${PYSITELIB}/scipy/special/tests/data/local.npz
${PYSITELIB}/scipy/special/tests/test_basic.py
+${PYSITELIB}/scipy/special/tests/test_bdtr.py
${PYSITELIB}/scipy/special/tests/test_boxcox.py
${PYSITELIB}/scipy/special/tests/test_cdflib.py
${PYSITELIB}/scipy/special/tests/test_cython_special.py
${PYSITELIB}/scipy/special/tests/test_data.py
${PYSITELIB}/scipy/special/tests/test_digamma.py
${PYSITELIB}/scipy/special/tests/test_ellip_harm.py
+${PYSITELIB}/scipy/special/tests/test_erfinv.py
${PYSITELIB}/scipy/special/tests/test_exponential_integrals.py
${PYSITELIB}/scipy/special/tests/test_faddeeva.py
+${PYSITELIB}/scipy/special/tests/test_gamma.py
${PYSITELIB}/scipy/special/tests/test_gammainc.py
${PYSITELIB}/scipy/special/tests/test_hypergeometric.py
${PYSITELIB}/scipy/special/tests/test_kolmogorov.py
${PYSITELIB}/scipy/special/tests/test_lambertw.py
+${PYSITELIB}/scipy/special/tests/test_log_softmax.py
${PYSITELIB}/scipy/special/tests/test_loggamma.py
${PYSITELIB}/scipy/special/tests/test_logit.py
${PYSITELIB}/scipy/special/tests/test_logsumexp.py
@@ -1634,6 +1648,9 @@
${PYSITELIB}/scipy/stats/_hypotests.py
${PYSITELIB}/scipy/stats/_hypotests.pyc
${PYSITELIB}/scipy/stats/_hypotests.pyo
+${PYSITELIB}/scipy/stats/_ksstats.py
+${PYSITELIB}/scipy/stats/_ksstats.pyc
+${PYSITELIB}/scipy/stats/_ksstats.pyo
${PYSITELIB}/scipy/stats/_multivariate.py
${PYSITELIB}/scipy/stats/_multivariate.pyc
${PYSITELIB}/scipy/stats/_multivariate.pyo
@@ -1647,6 +1664,9 @@
${PYSITELIB}/scipy/stats/_tukeylambda_stats.py
${PYSITELIB}/scipy/stats/_tukeylambda_stats.pyc
${PYSITELIB}/scipy/stats/_tukeylambda_stats.pyo
+${PYSITELIB}/scipy/stats/_wilcoxon_data.py
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