bifrost: Bump PKGREVISION, clean up

[Jason Bacon (via pkgsrc-wip) <commit-notify%pkgsrc.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon4000%gmail.com@localhost>
Pushed By:	outpaddling
Date:		Tue May 27 09:09:21 2025 -0500
Changeset:	4d01386710079b3b291aed5f7da8af506f04e530

Modified Files:
	bifrost/Makefile
	bifrost/distinfo
	bifrost/patches/patch-CMakeLists.txt

Log Message:
bifrost: Bump PKGREVISION, clean up

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=4d01386710079b3b291aed5f7da8af506f04e530

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 bifrost/Makefile                     | 13 ++++++++-----
 bifrost/distinfo                     |  2 +-
 bifrost/patches/patch-CMakeLists.txt |  6 ++++--
 3 files changed, 13 insertions(+), 8 deletions(-)

diffs:
diff --git a/bifrost/Makefile b/bifrost/Makefile
index dec2314bc4..223eafb3bb 100644
--- a/bifrost/Makefile
+++ b/bifrost/Makefile
@@ -6,6 +6,7 @@
 ###########################################################
 
 DISTNAME=	bifrost-1.3.5
+PKGREVISION=	1
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=pmelsted/}
 GITHUB_TAG=	v${PKGVERSION_NOREV}
@@ -15,12 +16,14 @@ HOMEPAGE=	https://github.com/pmelsted/bifrost
 COMMENT=	Parallel construction, indexing and querying of de Bruijn graphs
 LICENSE=	2-clause-bsd
 
-ONLY_FOR_PLATFORM=	 *-*-aarch64 *-*-x86_64 *-*-powerpc64 *-*-powerpc64le *-*-riscv64
+# Requires 64-bit processor
+ONLY_FOR_PLATFORM=	*-*-aarch64 *-*-x86_64 *-*-powerpc64 *-*-riscv64
 
-USE_LANGUAGES=	c c++
-USE_TOOLS+=	cmake
-USE_CMAKE=	yes
-CMAKE_CONFIGURE_ARGS+=	-DCOMPILATION_ARCH=${CPUTYPE:UOFF}
+USE_LANGUAGES=		c c++
+USE_TOOLS+=		cmake
+# FIXME: Why is this here?
+# CMAKE_CONFIGURE_ARGS+=	-DCOMPILATION_ARCH=${CPUTYPE:UOFF}
 
+.include "../../devel/cmake/build.mk"
 .include "../../devel/zlib/buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"
diff --git a/bifrost/distinfo b/bifrost/distinfo
index 32ceeabba0..f29a9ec890 100644
--- a/bifrost/distinfo
+++ b/bifrost/distinfo
@@ -3,7 +3,7 @@ $NetBSD$
 BLAKE2s (bifrost-1.3.5.tar.gz) = c89466cbb4519bdc31709316b0cc784e6b88e3216c5b92f1739be1b41484a2fc
 SHA512 (bifrost-1.3.5.tar.gz) = 5e29b771a665dc93c523e51d2958dcf3bf4874fd9ac1c71b8a65131a00831e1a62b013126d92de112f63bc285dc2250d11a0fbcdcb15c3e54b959d322d49e8fb
 Size (bifrost-1.3.5.tar.gz) = 356701 bytes
-SHA1 (patch-CMakeLists.txt) = b67d3b9da75644d6c414988a1e034f4732d4ab5c
+SHA1 (patch-CMakeLists.txt) = ae698a80b3d251ad7b79a1fc8e5757ae7f5d63f9
 SHA1 (patch-src_DataStorage.tcc) = 5fb55d98a1d6ce2018ade2a268d6d82e6334110c
 SHA1 (patch-src_libpopcnt.h) = ebccf4b759d7cbfa25e88f4d1f016791eb87afee
 SHA1 (patch-src_strict__fstream.hpp) = d5a215d44bc48030291c7acc5f7550df38821011
diff --git a/bifrost/patches/patch-CMakeLists.txt b/bifrost/patches/patch-CMakeLists.txt
index 69e69a7820..254aaf6463 100644
--- a/bifrost/patches/patch-CMakeLists.txt
+++ b/bifrost/patches/patch-CMakeLists.txt
@@ -1,8 +1,10 @@
 $NetBSD$
 
---- CMakeLists.txt.orig	2023-08-12 14:26:29 UTC
+# Respect build env
+
+--- CMakeLists.txt.orig	2024-03-15 15:20:17.000000000 +0000
 +++ CMakeLists.txt
-@@ -46,7 +46,6 @@ else(CMAKE_BUILD_TYPE MATCHES Debug)
+@@ -56,7 +56,6 @@ else(CMAKE_BUILD_TYPE MATCHES Debug)
  		set(CMAKE_EXE_LINKER_FLAGS "-pg")
  	else(CMAKE_BUILD_TYPE MATCHES Profile)
  		message("Build type: Release")