bamtools: Clean up

[Jason W. Bacon (via pkgsrc-wip) <commit-notify%pkgsrc.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason W. Bacon <bacon4000%gmail.com@localhost>
Pushed By:	outpaddling
Date:		Fri May 23 15:29:55 2025 -0500
Changeset:	3dd191063fc09c26573c61b2631f6fb932f15576

Modified Files:
	bamtools/DESCR
	bamtools/Makefile
	bamtools/distinfo
	bamtools/patches/patch-src_api_internal_io_HostInfo__p.cpp

Log Message:
bamtools: Clean up

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=3dd191063fc09c26573c61b2631f6fb932f15576

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 bamtools/DESCR                                             | 8 ++++++--
 bamtools/Makefile                                          | 9 ++-------
 bamtools/distinfo                                          | 2 +-
 bamtools/patches/patch-src_api_internal_io_HostInfo__p.cpp | 4 +++-
 4 files changed, 12 insertions(+), 11 deletions(-)

diffs:
diff --git a/bamtools/DESCR b/bamtools/DESCR
index 80b0bf0bca..0315ce2cc0 100644
--- a/bamtools/DESCR
+++ b/bamtools/DESCR
@@ -1,2 +1,6 @@
-BamTools provides both a programmer's API and an end-user's toolkit for handling
-BAM files.
+BamTools provides both a programmer's API and an end-user's
+toolkit for handling BAM files.  BAM is the binary alternative to
+the sequence alignment/map (SAM) format used for storing genetic
+sequence data. It uses BGZF block compression implemented on top
+of the standard gzip file format to provide good compression while
+allowing efficient random access for indexed queries.
diff --git a/bamtools/Makefile b/bamtools/Makefile
index 7d37a61882..60403b61d2 100644
--- a/bamtools/Makefile
+++ b/bamtools/Makefile
@@ -11,15 +11,10 @@ HOMEPAGE=	https://github.com/pezmaster31/bamtools
 COMMENT=	API and toolkit for handling BAM files
 LICENSE=	mit
 
-USE_LANGUAGES=	c c++
-USE_CMAKE=	yes
+USE_LANGUAGES=		c c++
 CMAKE_CONFIGURE_ARGS+=	-DBUILD_SHARED_LIBS:BOOL=ON
-CMAKE_ARG_PATH=	..
-CONFIGURE_DIRS=	_build
-
-post-extract:
-	${RUN} mkdir -p ${WRKSRC}/_build
 
+.include "../../devel/cmake/build.mk"
 .include "../../devel/zlib/buildlink3.mk"
 .include "../../textproc/jsoncpp/buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"
diff --git a/bamtools/distinfo b/bamtools/distinfo
index 15ffe026d8..b6770e3cb8 100644
--- a/bamtools/distinfo
+++ b/bamtools/distinfo
@@ -3,5 +3,5 @@ $NetBSD$
 BLAKE2s (bamtools-2.5.3.tar.gz) = fd0dd4de76283a6f26c45d193282d568cd8e2bd59083ba1117374e4a57d1c0bf
 SHA512 (bamtools-2.5.3.tar.gz) = bde9d98048d9f30d7f3c4e75db97e610ab58148dedadd09a36ad2421a6357b24510abda2451452d1fb9b40e22e1b8fe6f4e4c6ee1c529c426055a050a24b52d8
 Size (bamtools-2.5.3.tar.gz) = 245648 bytes
-SHA1 (patch-src_api_internal_io_HostInfo__p.cpp) = c5d466337e25c4d63a477f509169270c396b6c09
+SHA1 (patch-src_api_internal_io_HostInfo__p.cpp) = 0b6d287fc4e1590164530e7a06bbc14c6010e4bc
 SHA1 (patch-src_api_internal_io_TcpSocketEngine__unix__p.cpp) = 6df3fabc4ea9bb87704fd0e84e3639d886598b57
diff --git a/bamtools/patches/patch-src_api_internal_io_HostInfo__p.cpp b/bamtools/patches/patch-src_api_internal_io_HostInfo__p.cpp
index fd51ac3cad..bbbbd8287b 100644
--- a/bamtools/patches/patch-src_api_internal_io_HostInfo__p.cpp
+++ b/bamtools/patches/patch-src_api_internal_io_HostInfo__p.cpp
@@ -1,5 +1,7 @@
 $NetBSD$
-#add netinit
+
+# Potability
+
 --- src/api/internal/io/HostInfo_p.cpp.orig	2018-03-12 15:13:26.429616632 +0000
 +++ src/api/internal/io/HostInfo_p.cpp
 @@ -11,6 +11,8 @@