ad2vcf, fasda, peak-classifier, vcf-split, vcf2hap: Unbreak install

[Jason W. Bacon (via pkgsrc-wip) <commit-notify%pkgsrc.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason W. Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Thu Nov 28 17:49:36 2024 -0600
Changeset:	6b6c03a31637c9625c39da8f800ecf224f374fc5

Modified Files:
	ad2vcf/Makefile
	fasda/Makefile
	peak-classifier/Makefile
	vcf-split/Makefile
	vcf2hap/Makefile

Log Message:
ad2vcf, fasda, peak-classifier, vcf-split, vcf2hap: Unbreak install

Failing with non-default PKGMANDIR
MAKE_ENV+=MANDIR=${PKGMANDIR}

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=6b6c03a31637c9625c39da8f800ecf224f374fc5

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 ad2vcf/Makefile          | 2 +-
 fasda/Makefile           | 1 +
 peak-classifier/Makefile | 2 ++
 vcf-split/Makefile       | 2 +-
 vcf2hap/Makefile         | 2 +-
 5 files changed, 6 insertions(+), 3 deletions(-)

diffs:
diff --git a/ad2vcf/Makefile b/ad2vcf/Makefile
index 577c1dfcd2..c0113d655e 100644
--- a/ad2vcf/Makefile
+++ b/ad2vcf/Makefile
@@ -10,7 +10,7 @@ HOMEPAGE=	https://github.com/auerlab/ad2vcf
 COMMENT=	Add allelic depth info from a SAM stream to a VCF file
 LICENSE=	2-clause-bsd
 
-MAKE_ENV+=	VERSION=${PKGVERSION}
+MAKE_ENV+=	VERSION=${PKGVERSION} MANDIR=${PREFIX}/${PKGMANDIR}
 
 pre-build:
 	cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend
diff --git a/fasda/Makefile b/fasda/Makefile
index 101cc83469..3db4f9e1d8 100644
--- a/fasda/Makefile
+++ b/fasda/Makefile
@@ -12,6 +12,7 @@ LICENSE=	2-clause-bsd
 DEPENDS=	stringtie>0:../../wip/stringtie
 
 LDFLAGS.SunOS+=	-lresolv
+MAKE_ENV+=	MANDIR=${PREFIX}/${PKGMANDIR}
 
 .include "../../wip/biolibc/buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"
diff --git a/peak-classifier/Makefile b/peak-classifier/Makefile
index 811c022230..9a17fa5cd9 100644
--- a/peak-classifier/Makefile
+++ b/peak-classifier/Makefile
@@ -14,6 +14,8 @@ DEPENDS+=	bedtools>=0:../../biology/bedtools
 
 REPLACE_PYTHON=	feature-view.py
 
+MAKE_ENV+=	MANDIR=${PREFIX}/${PKGMANDIR}
+
 .include "../../wip/biolibc/buildlink3.mk"
 .include "../../lang/python/application.mk"
 .include "../../mk/bsd.pkg.mk"
diff --git a/vcf-split/Makefile b/vcf-split/Makefile
index 50bcc8c1e2..1d1e030b68 100644
--- a/vcf-split/Makefile
+++ b/vcf-split/Makefile
@@ -10,7 +10,7 @@ HOMEPAGE=	https://github.com/auerlab/vcf-split
 COMMENT=	Split a multi-sample VCF into single-sample VCFs
 LICENSE=	2-clause-bsd
 
-MAKE_ENV+=	VERSION=${PKGVERSION}
+MAKE_ENV+=	VERSION=${PKGVERSION} MANDIR=${PREFIX}/${PKGMANDIR}
 
 pre-build:
 	cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend
diff --git a/vcf2hap/Makefile b/vcf2hap/Makefile
index d0f45de3be..b5174072ee 100644
--- a/vcf2hap/Makefile
+++ b/vcf2hap/Makefile
@@ -10,7 +10,7 @@ HOMEPAGE=	https://github.com/auerlab/vcf2hap
 COMMENT=	Generate .hap file from VCF for haplohseq
 LICENSE=	2-clause-bsd
 
-MAKE_ENV+=	VERSION=${PKGVERSION}
+MAKE_ENV+=	VERSION=${PKGVERSION} MANDIR=${PREFIX}/${PKGMANDIR}
 
 pre-build:
 	cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend