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py-multiqc: Add orca and psutil deps
Module Name: pkgsrc-wip
Committed By: Jason W. Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Thu Nov 21 16:27:53 2024 -0600
Changeset: 5888a85346e9abd60e0a2ddf7d817c210243a517
Modified Files:
py-multiqc/DESCR
py-multiqc/Makefile
Log Message:
py-multiqc: Add orca and psutil deps
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=5888a85346e9abd60e0a2ddf7d817c210243a517
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
py-multiqc/DESCR | 6 +++---
py-multiqc/Makefile | 10 ++++++----
2 files changed, 9 insertions(+), 7 deletions(-)
diffs:
diff --git a/py-multiqc/DESCR b/py-multiqc/DESCR
index e4eb84c16e..2b0bb42d8a 100644
--- a/py-multiqc/DESCR
+++ b/py-multiqc/DESCR
@@ -1,3 +1,3 @@
-MultiQC searches a given directory for analysis logs and compiles an HTML
-report. It's a general use tool, perfect for summarising the output from
-numerous bioinformatics tools.
+MultiQC searches a given directory for analysis logs and compiles
+an HTML report. It's a general use tool, perfect for summarising
+the output from numerous bioinformatics tools.
diff --git a/py-multiqc/Makefile b/py-multiqc/Makefile
index 62f8cfc9e3..8a7c02598b 100644
--- a/py-multiqc/Makefile
+++ b/py-multiqc/Makefile
@@ -16,21 +16,23 @@ COMMENT= Aggregate bioinformatics analysis reports across samples and tools
LICENSE= gnu-gpl-v3
# Use either py-kaleido (not in ports yet) or py-orca + py-psutil
+# kaleido's dep choreographer only works with chrome as of 2024-11-24
DEPENDS+= ${PYPKGPREFIX}-humanize-[0-9]*:../../textproc/py-humanize
DEPENDS+= ${PYPKGPREFIX}-importlib-metadata-[0-9]*:../../devel/py-importlib-metadata
-DEPENDS+= ${PYPKGPREFIX}-orca-[0-9]*:../../devel/py-orca
+DEPENDS+= ${PYPKGPREFIX}-orca-[0-9]*:../../wip/py-orca
+DEPENDS+= ${PYPKGPREFIX}-psutil-[0-9]*:../../wip/py-psutil
DEPENDS+= ${PYPKGPREFIX}-psutil-[0-9]*:../../sysutils/py-psutil
DEPENDS+= ${PYPKGPREFIX}-packaging-[0-9]*:../../devel/py-packaging
DEPENDS+= ${PYPKGPREFIX}-pydantic>=2.7.0:../../devel/py-pydantic
DEPENDS+= ${PYPKGPREFIX}-typeguard-[0-9]*:../../devel/py-typeguard
-DEPENDS+= ${PYPKGPREFIX}-tqdm-[0-9]*:../../devel/py-tqdm
+DEPENDS+= ${PYPKGPREFIX}-tqdm-[0-9]*:../../misc/py-tqdm
DEPENDS+= ${PYPKGPREFIX}-jinja2>=3.0.0:../../textproc/py-jinja2
DEPENDS+= ${PYPKGPREFIX}-rich-click-[0-9]*:../../devel/py-rich-click
DEPENDS+= ${PYPKGPREFIX}-coloredlogs-[0-9]*:../../devel/py-coloredlogs
DEPENDS+= ${PYPKGPREFIX}-plotly>=5.1.8:../../wip/py-plotly
DEPENDS+= ${PYPKGPREFIX}-markdown-[0-9]*:../../textproc/py-markdown
DEPENDS+= ${PYPKGPREFIX}-rich>=10:../../comms/py-rich
-DEPENDS+= ${PYPKGPREFIX}-pyyaml>=4:../../textproc/py-pyyaml
+DEPENDS+= ${PYPKGPREFIX}-yaml>=4:../../textproc/py-yaml
DEPENDS+= ${PYPKGPREFIX}-requests-[0-9]*:../../devel/py-requests
DEPENDS+= ${PYPKGPREFIX}-spectra>=0.0.10:../../graphics/py-spectra
DEPENDS+= ${PYPKGPREFIX}-Pillow>=10:../../graphics/py-Pillow
@@ -40,6 +42,6 @@ DEPENDS+= ${PYPKGPREFIX}-click-[0-9]*:../../devel/py-click
post-patch:
${RM} ${WRKSRC}/multiqc/multiqc.py.orig
-.include "../../lang/python/egg.mk"
+.include "../../lang/python/wheel.mk"
.include "../../math/py-numpy/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"
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