bcf-score: Improve depends

[Jason W. Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason W. Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Mon Oct 7 07:31:34 2024 -0500
Changeset:	b6888b35be046b4b64d36a9f6c2c82bec86cc18d

Modified Files:
	bcf-score/Makefile

Log Message:
bcf-score: Improve depends

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=b6888b35be046b4b64d36a9f6c2c82bec86cc18d

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 bcf-score/Makefile | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diffs:
diff --git a/bcf-score/Makefile b/bcf-score/Makefile
index df1f505015..336f918af6 100644
--- a/bcf-score/Makefile
+++ b/bcf-score/Makefile
@@ -19,15 +19,16 @@ REPLACE.R.old=		/usr/bin/env Rscript
 REPLACE.R.new=		${PREFIX}/bin/Rscript
 REPLACE_FILES.R=	bcf-score/*.R
 
+REPLACE_BASH+=		mpileup_bench/compare_vcf_simple.sh
+
 SUBST_CLASSES+=		version
 SUBST_STAGE.version=	pre-configure
 SUBST_SED.version=	-e "s|m4_esyscmd_s(\[./version.sh 2>/dev/null\])|[${PKGVERSION_NOREV}]|"
 SUBST_FILES.version=	configure.ac
 
-DEPENDS=	bash>=0:../../shells/bash
 DEPENDS+=	bcftools>=1.16:../../biology/bcftools
 
-USE_TOOLS+=	autoconf automake autoreconf gmake perl pax
+USE_TOOLS+=	autoconf automake autoreconf bash gmake perl pax
 GNU_CONFIGURE=	yes
 REPLACE_PERL=	misc/* test/test.pl
 
@@ -67,6 +68,7 @@ do-install:
 .include "../../devel/zlib/buildlink3.mk"
 .include "../../archivers/bzip2/buildlink3.mk"
 .include "../../archivers/xz/buildlink3.mk"
+.include "../../math/gsl/buildlink3.mk"
 .include "../../math/suitesparse/buildlink3.mk"
 .include "../../lang/python/application.mk"
 .include "../../wip/htslib/buildlink3.mk"