py-cantera: initial revision (functional, but has TODOs)

To: pkgsrc-wip-changes%NetBSD.org@localhost
Subject: py-cantera: initial revision (functional, but has TODOs)
From: mayuresh <mayuresh%acm.org@localhost>
Date: Tue, 24 Sep 2024 05:19:39 +0000
Module Name:	pkgsrc-wip
Committed By:	mayuresh <mayuresh%acm.org@localhost>
Pushed By:	mayuresh
Date:		Tue Sep 24 10:48:44 2024 +0530
Changeset:	6307685ca7beeb7b593fee1a9c2d9f1a0cfac97d

Modified Files:
	py-cantera/Makefile
	py-cantera/TODO
	py-cantera/distinfo
	py-cantera/patches/patch-SConstruct
Added Files:
	py-cantera/COMMIT_MSG
	py-cantera/DESCR
	py-cantera/PLIST

Log Message:
py-cantera: initial revision (functional, but has TODOs)

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=6307685ca7beeb7b593fee1a9c2d9f1a0cfac97d

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 py-cantera/COMMIT_MSG               |   3 +
 py-cantera/DESCR                    |  12 +
 py-cantera/Makefile                 |  15 +-
 py-cantera/PLIST                    | 469 ++++++++++++++++++++++++++++++++++++
 py-cantera/TODO                     |  14 +-
 py-cantera/distinfo                 |   5 +-
 py-cantera/patches/patch-SConstruct |  14 +-
 7 files changed, 527 insertions(+), 5 deletions(-)

diffs:
diff --git a/py-cantera/COMMIT_MSG b/py-cantera/COMMIT_MSG
new file mode 100644
index 0000000000..a2cbba6287
--- /dev/null
+++ b/py-cantera/COMMIT_MSG
@@ -0,0 +1,3 @@
+biology/py-cantera: Add py-cantera version 3.1.0.a4
+
+Packaged in wip by Mayuresh (mayuresh%acm.org@localhost)
diff --git a/py-cantera/DESCR b/py-cantera/DESCR
new file mode 100644
index 0000000000..15c5b9e829
--- /dev/null
+++ b/py-cantera/DESCR
@@ -0,0 +1,12 @@
+Cantera is an open-source collection of object-oriented software tools for
+problems involving chemical kinetics, thermodynamics, and transport processes.
+Among other things, it can be used to:
+
+    Evaluate thermodynamic and transport properties of mixtures
+    Compute chemical equilibrium
+    Evaluate species chemical production rates
+    Conduct kinetics simulations with large reaction mechanisms
+    Simulate one-dimensional flames
+    Conduct reaction path analysis
+    Create process simulations using networks of stirred reactors
+    Model non-ideal fluids
diff --git a/py-cantera/Makefile b/py-cantera/Makefile
index eef2d51fca..6c9296f786 100644
--- a/py-cantera/Makefile
+++ b/py-cantera/Makefile
@@ -8,6 +8,8 @@ CATEGORIES=	biology python
 MASTER_SITES=	${MASTER_SITE_GITHUB:=Cantera/}
 DIST_SUBDIR=	${GITHUB_PROJECT}
 
+GITHUB_SUBMODULES+=	cantera cantera-example-data dbc4212 data/example_data
+
 MAINTAINER=	pkgsrc-users%NetBSD.org@localhost
 HOMEPAGE=	https://github.com/Cantera/cantera/
 COMMENT=	Chemical kinetics, thermodynamics, and transport tool suite
@@ -18,8 +20,10 @@ USE_TOOLS+=	pkg-config
 USE_LANGUAGES=	c c++ fortran
 
 SCONS_BUILD_ARGS+=	build
-
-#MAKE_ENV+=	CWRAPPERS_CONFIG_DIR=${CWRAPPERS_CONFIG_DIR}
+SCONS_BUILD_ARGS+=	prefix=${DESTDIR}${PREFIX}
+SCONS_BUILD_ARGS+=	sundials_include=${PREFIX}/include
+SCONS_BUILD_ARGS+=	sundials_libdir=${PREFIX}/lib
+SCONS_BUILD_ARGS+=	run_examples=no
 
 PKGCONFIG_OVERRIDE+=	platform/posix/cantera.pc.in
 
@@ -29,7 +33,14 @@ DEPENDS+=	eigen3>=3.4.0:../../math/eigen3
 DEPENDS+=	boost-libs>=1.85.0:../../devel/boost-libs
 DEPENDS+=	sundials>=7.1.1:../../wip/sundials
 
+TOOL_DEPENDS+=	${PYPKGPREFIX}-pip>=0:../../devel/py-pip
+TOOL_DEPENDS+=	${PYPKGPREFIX}-ruamel-yaml>=0.18.6:../../devel/py-ruamel-yaml
+
+CHECK_RELRO=	no
+
+.include "../../math/py-numpy/buildlink3.mk"
 .include "../../devel/boost-libs/buildlink3.mk"
+.include "../../devel/py-cython/buildlink3.mk"
 .include "../../math/eigen3/buildlink3.mk"
 .include "../../wip/sundials/buildlink3.mk"
 .include "../../textproc/yaml-cpp/buildlink3.mk"
diff --git a/py-cantera/PLIST b/py-cantera/PLIST
new file mode 100644
index 0000000000..b730b9e768
--- /dev/null
+++ b/py-cantera/PLIST
@@ -0,0 +1,469 @@
+@comment $NetBSD$
+bin/ck2yaml
+bin/cti2yaml
+bin/ctml2yaml
+bin/lxcat2yaml
+bin/yaml2ck
+include/cantera/base/AnyMap.h
+include/cantera/base/AnyMap.inl.h
+include/cantera/base/Array.h
+include/cantera/base/Delegator.h
+include/cantera/base/ExtensionManager.h
+include/cantera/base/ExtensionManagerFactory.h
+include/cantera/base/ExternalLogger.h
+include/cantera/base/FactoryBase.h
+include/cantera/base/Interface.h
+include/cantera/base/NoExitLogger.h
+include/cantera/base/Solution.h
+include/cantera/base/SolutionArray.h
+include/cantera/base/Storage.h
+include/cantera/base/Units.h
+include/cantera/base/ValueCache.h
+include/cantera/base/YamlWriter.h
+include/cantera/base/clockWC.h
+include/cantera/base/config.h
+include/cantera/base/config.h.in
+include/cantera/base/ct_defs.h
+include/cantera/base/ctexceptions.h
+include/cantera/base/fmt.h
+include/cantera/base/global.h
+include/cantera/base/logger.h
+include/cantera/base/stringUtils.h
+include/cantera/base/utilities.h
+include/cantera/base/yaml.h
+include/cantera/cantera.mod
+include/cantera/cantera_funcs.mod
+include/cantera/cantera_kinetics.mod
+include/cantera/cantera_thermo.mod
+include/cantera/cantera_transport.mod
+include/cantera/clib/clib_defs.h
+include/cantera/clib/ct.h
+include/cantera/clib/ctfunc.h
+include/cantera/clib/ctmatlab.h
+include/cantera/clib/ctmultiphase.h
+include/cantera/clib/ctonedim.h
+include/cantera/clib/ctreactor.h
+include/cantera/clib/ctrpath.h
+include/cantera/clib/ctsurf.h
+include/cantera/core.h
+include/cantera/cython/funcWrapper.h
+include/cantera/cython/kinetics_utils.h
+include/cantera/cython/thermo_utils.h
+include/cantera/cython/transport_utils.h
+include/cantera/cython/utils_utils.h
+include/cantera/cython/wrappers.h
+include/cantera/equil/ChemEquil.h
+include/cantera/equil/MultiPhase.h
+include/cantera/equil/MultiPhaseEquil.h
+include/cantera/equil/vcs_MultiPhaseEquil.h
+include/cantera/equil/vcs_SpeciesProperties.h
+include/cantera/equil/vcs_VolPhase.h
+include/cantera/equil/vcs_defs.h
+include/cantera/equil/vcs_internal.h
+include/cantera/equil/vcs_solve.h
+include/cantera/equil/vcs_species_thermo.h
+include/cantera/extensions/PythonExtensionManager.h
+include/cantera/extensions/PythonHandle.h
+include/cantera/fct.mod
+include/cantera/kinetics.h
+include/cantera/kinetics/Arrhenius.h
+include/cantera/kinetics/BlowersMaselRate.h
+include/cantera/kinetics/BulkKinetics.h
+include/cantera/kinetics/ChebyshevRate.h
+include/cantera/kinetics/Custom.h
+include/cantera/kinetics/EdgeKinetics.h
+include/cantera/kinetics/ElectronCollisionPlasmaRate.h
+include/cantera/kinetics/Falloff.h
+include/cantera/kinetics/Group.h
+include/cantera/kinetics/ImplicitSurfChem.h
+include/cantera/kinetics/InterfaceKinetics.h
+include/cantera/kinetics/InterfaceRate.h
+include/cantera/kinetics/Kinetics.h
+include/cantera/kinetics/KineticsFactory.h
+include/cantera/kinetics/MultiRate.h
+include/cantera/kinetics/MultiRateBase.h
+include/cantera/kinetics/PlogRate.h
+include/cantera/kinetics/Reaction.h
+include/cantera/kinetics/ReactionData.h
+include/cantera/kinetics/ReactionPath.h
+include/cantera/kinetics/ReactionRate.h
+include/cantera/kinetics/ReactionRateDelegator.h
+include/cantera/kinetics/ReactionRateFactory.h
+include/cantera/kinetics/StoichManager.h
+include/cantera/kinetics/ThirdBodyCalc.h
+include/cantera/kinetics/TwoTempPlasmaRate.h
+include/cantera/kinetics/solveSP.h
+include/cantera/numerics/AdaptivePreconditioner.h
+include/cantera/numerics/BandMatrix.h
+include/cantera/numerics/CVodesIntegrator.h
+include/cantera/numerics/DenseMatrix.h
+include/cantera/numerics/Func1.h
+include/cantera/numerics/Func1Factory.h
+include/cantera/numerics/FuncEval.h
+include/cantera/numerics/GeneralMatrix.h
+include/cantera/numerics/IdasIntegrator.h
+include/cantera/numerics/Integrator.h
+include/cantera/numerics/PreconditionerBase.h
+include/cantera/numerics/PreconditionerFactory.h
+include/cantera/numerics/SundialsContext.h
+include/cantera/numerics/ctlapack.h
+include/cantera/numerics/eigen_dense.h
+include/cantera/numerics/eigen_sparse.h
+include/cantera/numerics/funcs.h
+include/cantera/numerics/polyfit.h
+include/cantera/numerics/sundials_headers.h
+include/cantera/oneD/Boundary1D.h
+include/cantera/oneD/Domain1D.h
+include/cantera/oneD/DomainFactory.h
+include/cantera/oneD/Flow1D.h
+include/cantera/oneD/IonFlow.h
+include/cantera/oneD/MultiJac.h
+include/cantera/oneD/MultiNewton.h
+include/cantera/oneD/OneDim.h
+include/cantera/oneD/Sim1D.h
+include/cantera/oneD/StFlow.h
+include/cantera/oneD/refine.h
+include/cantera/onedim.h
+include/cantera/reactionpaths.h
+include/cantera/test/gtest_utils.h
+include/cantera/thermo.h
+include/cantera/thermo/BinarySolutionTabulatedThermo.h
+include/cantera/thermo/ConstCpPoly.h
+include/cantera/thermo/CoverageDependentSurfPhase.h
+include/cantera/thermo/DebyeHuckel.h
+include/cantera/thermo/EdgePhase.h
+include/cantera/thermo/Elements.h
+include/cantera/thermo/GibbsExcessVPSSTP.h
+include/cantera/thermo/HMWSoln.h
+include/cantera/thermo/IdealGasPhase.h
+include/cantera/thermo/IdealMolalSoln.h
+include/cantera/thermo/IdealSolidSolnPhase.h
+include/cantera/thermo/IdealSolnGasVPSS.h
+include/cantera/thermo/LatticePhase.h
+include/cantera/thermo/LatticeSolidPhase.h
+include/cantera/thermo/MargulesVPSSTP.h
+include/cantera/thermo/MetalPhase.h
+include/cantera/thermo/MixtureFugacityTP.h
+include/cantera/thermo/MolalityVPSSTP.h
+include/cantera/thermo/Mu0Poly.h
+include/cantera/thermo/MultiSpeciesThermo.h
+include/cantera/thermo/Nasa9Poly1.h
+include/cantera/thermo/Nasa9PolyMultiTempRegion.h
+include/cantera/thermo/NasaPoly1.h
+include/cantera/thermo/NasaPoly2.h
+include/cantera/thermo/PDSS.h
+include/cantera/thermo/PDSSFactory.h
+include/cantera/thermo/PDSS_ConstVol.h
+include/cantera/thermo/PDSS_HKFT.h
+include/cantera/thermo/PDSS_SSVol.h
+include/cantera/thermo/PDSS_Water.h
+include/cantera/thermo/PengRobinson.h
+include/cantera/thermo/Phase.h
+include/cantera/thermo/PlasmaPhase.h
+include/cantera/thermo/PureFluidPhase.h
+include/cantera/thermo/RedlichKisterVPSSTP.h
+include/cantera/thermo/RedlichKwongMFTP.h
+include/cantera/thermo/ShomatePoly.h
+include/cantera/thermo/SingleSpeciesTP.h
+include/cantera/thermo/Species.h
+include/cantera/thermo/SpeciesThermoFactory.h
+include/cantera/thermo/SpeciesThermoInterpType.h
+include/cantera/thermo/StoichSubstance.h
+include/cantera/thermo/SurfPhase.h
+include/cantera/thermo/ThermoFactory.h
+include/cantera/thermo/ThermoPhase.h
+include/cantera/thermo/VPStandardStateTP.h
+include/cantera/thermo/WaterProps.h
+include/cantera/thermo/WaterPropsIAPWS.h
+include/cantera/thermo/WaterPropsIAPWSphi.h
+include/cantera/thermo/WaterSSTP.h
+include/cantera/thermo/electrolytes.h
+include/cantera/thermo/speciesThermoTypes.h
+include/cantera/tpx/Sub.h
+include/cantera/tpx/utils.h
+include/cantera/transport.h
+include/cantera/transport/DustyGasTransport.h
+include/cantera/transport/GasTransport.h
+include/cantera/transport/HighPressureGasTransport.h
+include/cantera/transport/IonGasTransport.h
+include/cantera/transport/MixTransport.h
+include/cantera/transport/MultiTransport.h
+include/cantera/transport/Transport.h
+include/cantera/transport/TransportData.h
+include/cantera/transport/TransportFactory.h
+include/cantera/transport/UnityLewisTransport.h
+include/cantera/transport/WaterTransport.h
+include/cantera/zeroD/ConstPressureMoleReactor.h
+include/cantera/zeroD/ConstPressureReactor.h
+include/cantera/zeroD/FlowDevice.h
+include/cantera/zeroD/FlowDeviceFactory.h
+include/cantera/zeroD/FlowReactor.h
+include/cantera/zeroD/IdealGasConstPressureMoleReactor.h
+include/cantera/zeroD/IdealGasConstPressureReactor.h
+include/cantera/zeroD/IdealGasMoleReactor.h
+include/cantera/zeroD/IdealGasReactor.h
+include/cantera/zeroD/MoleReactor.h
+include/cantera/zeroD/Reactor.h
+include/cantera/zeroD/ReactorBase.h
+include/cantera/zeroD/ReactorDelegator.h
+include/cantera/zeroD/ReactorFactory.h
+include/cantera/zeroD/ReactorNet.h
+include/cantera/zeroD/ReactorSurface.h
+include/cantera/zeroD/Reservoir.h
+include/cantera/zeroD/Wall.h
+include/cantera/zeroD/WallFactory.h
+include/cantera/zeroD/flowControllers.h
+include/cantera/zerodim.h
+lib/libcantera.a
+lib/libcantera_fortran.a
+lib/libcantera_fortran_shared.so
+lib/libcantera_fortran_shared.so.3
+lib/libcantera_fortran_shared.so.3.1.0
+lib/libcantera_python3_12.so
+lib/libcantera_shared.so
+lib/libcantera_shared.so.3
+lib/libcantera_shared.so.3.1.0
+lib/pkgconfig/cantera.pc
+${PYSITELIB}/Cantera-${PKGVERSION}.dist-info/INSTALLER
+${PYSITELIB}/Cantera-${PKGVERSION}.dist-info/LICENSE.txt
+${PYSITELIB}/Cantera-${PKGVERSION}.dist-info/METADATA
+${PYSITELIB}/Cantera-${PKGVERSION}.dist-info/RECORD
+${PYSITELIB}/Cantera-${PKGVERSION}.dist-info/REQUESTED
+${PYSITELIB}/Cantera-${PKGVERSION}.dist-info/WHEEL
+${PYSITELIB}/Cantera-${PKGVERSION}.dist-info/direct_url.json
+${PYSITELIB}/Cantera-${PKGVERSION}.dist-info/entry_points.txt
+${PYSITELIB}/Cantera-${PKGVERSION}.dist-info/top_level.txt
+${PYSITELIB}/cantera/__init__.pxd
+${PYSITELIB}/cantera/__init__.py
+${PYSITELIB}/cantera/__init__.pyc
+${PYSITELIB}/cantera/_cantera.so
+${PYSITELIB}/cantera/_onedim.pxd
+${PYSITELIB}/cantera/_utils.pxd
+${PYSITELIB}/cantera/ck2yaml.py
+${PYSITELIB}/cantera/ck2yaml.pyc
+${PYSITELIB}/cantera/composite.py
+${PYSITELIB}/cantera/composite.pyc
+${PYSITELIB}/cantera/constants.pxd
+${PYSITELIB}/cantera/ctcxx.pxd
+${PYSITELIB}/cantera/cti2yaml.py
+${PYSITELIB}/cantera/cti2yaml.pyc
+${PYSITELIB}/cantera/ctml2yaml.py
+${PYSITELIB}/cantera/ctml2yaml.pyc
+${PYSITELIB}/cantera/data.py
+${PYSITELIB}/cantera/data.pyc
+${PYSITELIB}/cantera/data/KOH.yaml
+${PYSITELIB}/cantera/data/SiF4_NH3_mec.yaml
+${PYSITELIB}/cantera/data/air.yaml
+${PYSITELIB}/cantera/data/airNASA9.yaml
+${PYSITELIB}/cantera/data/critical-properties.yaml
+${PYSITELIB}/cantera/data/diamond.yaml
+${PYSITELIB}/cantera/data/element-standard-entropies.yaml
+${PYSITELIB}/cantera/data/example_data/YZA.yaml
+${PYSITELIB}/cantera/data/example_data/ammonia-Ru-Ba-YSZ-CSM-2019.yaml
+${PYSITELIB}/cantera/data/example_data/co2-thermo.yaml
+${PYSITELIB}/cantera/data/example_data/covdepsurf.yaml
+${PYSITELIB}/cantera/data/example_data/n-hexane-NUIG-2015.yaml
+${PYSITELIB}/cantera/data/example_data/oxygen-plasma-itikawa.yaml
+${PYSITELIB}/cantera/data/example_data/silicon_carbide.yaml
+${PYSITELIB}/cantera/data/graphite.yaml
+${PYSITELIB}/cantera/data/gri30.yaml
+${PYSITELIB}/cantera/data/gri30_highT.yaml
+${PYSITELIB}/cantera/data/gri30_ion.yaml
+${PYSITELIB}/cantera/data/h2o2.yaml
+${PYSITELIB}/cantera/data/liquidvapor.yaml
+${PYSITELIB}/cantera/data/lithium_ion_battery.yaml
+${PYSITELIB}/cantera/data/methane_pox_on_pt.yaml
+${PYSITELIB}/cantera/data/nDodecane_Reitz.yaml
+${PYSITELIB}/cantera/data/nasa_condensed.yaml
+${PYSITELIB}/cantera/data/nasa_gas.yaml
+${PYSITELIB}/cantera/data/ohn.yaml
+${PYSITELIB}/cantera/data/ptcombust.yaml
+${PYSITELIB}/cantera/data/silicon.yaml
+${PYSITELIB}/cantera/data/sofc.yaml
+${PYSITELIB}/cantera/data/water.yaml
+${PYSITELIB}/cantera/delegator.pxd
+${PYSITELIB}/cantera/drawnetwork.py
+${PYSITELIB}/cantera/drawnetwork.pyc
+${PYSITELIB}/cantera/examples/README.txt
+${PYSITELIB}/cantera/func1.pxd
+${PYSITELIB}/cantera/interrupts.py
+${PYSITELIB}/cantera/interrupts.pyc
+${PYSITELIB}/cantera/kinetics.pxd
+${PYSITELIB}/cantera/liquidvapor.py
+${PYSITELIB}/cantera/liquidvapor.pyc
+${PYSITELIB}/cantera/lxcat2yaml.py
+${PYSITELIB}/cantera/lxcat2yaml.pyc
+${PYSITELIB}/cantera/mixture.pxd
+${PYSITELIB}/cantera/onedim.py
+${PYSITELIB}/cantera/onedim.pyc
+${PYSITELIB}/cantera/preconditioners.pxd
+${PYSITELIB}/cantera/reaction.pxd
+${PYSITELIB}/cantera/reactionpath.pxd
+${PYSITELIB}/cantera/reactor.pxd
+${PYSITELIB}/cantera/solutionbase.pxd
+${PYSITELIB}/cantera/speciesthermo.pxd
+${PYSITELIB}/cantera/test/README.txt
+${PYSITELIB}/cantera/thermo.pxd
+${PYSITELIB}/cantera/transport.pxd
+${PYSITELIB}/cantera/units.pxd
+${PYSITELIB}/cantera/utils.py
+${PYSITELIB}/cantera/utils.pyc
+${PYSITELIB}/cantera/with_units/__init__.py
+${PYSITELIB}/cantera/with_units/__init__.pyc
+${PYSITELIB}/cantera/with_units/solution.py
+${PYSITELIB}/cantera/with_units/solution.pyc
+${PYSITELIB}/cantera/yaml2ck.py
+${PYSITELIB}/cantera/yaml2ck.pyc
+${PYSITELIB}/cantera/yamlwriter.pxd
+man/man1/ck2yaml.1
+man/man1/cti2yaml.1
+man/man1/ctml2yaml.1
+man/man1/yaml2ck.1
+share/cantera/data/KOH.yaml
+share/cantera/data/SiF4_NH3_mec.yaml
+share/cantera/data/air.yaml
+share/cantera/data/airNASA9.yaml
+share/cantera/data/critical-properties.yaml
+share/cantera/data/diamond.yaml
+share/cantera/data/element-standard-entropies.yaml
+share/cantera/data/example_data/YZA.yaml
+share/cantera/data/example_data/ammonia-Ru-Ba-YSZ-CSM-2019.yaml
+share/cantera/data/example_data/co2-thermo.yaml
+share/cantera/data/example_data/covdepsurf.yaml
+share/cantera/data/example_data/n-hexane-NUIG-2015.yaml
+share/cantera/data/example_data/oxygen-plasma-itikawa.yaml
+share/cantera/data/example_data/silicon_carbide.yaml
+share/cantera/data/graphite.yaml
+share/cantera/data/gri30.yaml
+share/cantera/data/gri30_highT.yaml
+share/cantera/data/gri30_ion.yaml
+share/cantera/data/h2o2.yaml
+share/cantera/data/liquidvapor.yaml
+share/cantera/data/lithium_ion_battery.yaml
+share/cantera/data/methane_pox_on_pt.yaml
+share/cantera/data/nDodecane_Reitz.yaml
+share/cantera/data/nasa_condensed.yaml
+share/cantera/data/nasa_gas.yaml
+share/cantera/data/ohn.yaml
+share/cantera/data/ptcombust.yaml
+share/cantera/data/silicon.yaml
+share/cantera/data/sofc.yaml
+share/cantera/data/water.yaml
+share/cantera/doc/LICENSE.txt
+share/cantera/samples/clib/CMakeLists.txt
+share/cantera/samples/clib/README.rst
+share/cantera/samples/clib/SConstruct
+share/cantera/samples/clib/demo.c
+share/cantera/samples/cxx/LiC6_electrode/CMakeLists.txt
+share/cantera/samples/cxx/LiC6_electrode/LiC6_electrode.cpp
+share/cantera/samples/cxx/LiC6_electrode/SConstruct
+share/cantera/samples/cxx/README.rst
+share/cantera/samples/cxx/bvp/BoundaryValueProblem.h
+share/cantera/samples/cxx/bvp/CMakeLists.txt
+share/cantera/samples/cxx/bvp/SConstruct
+share/cantera/samples/cxx/bvp/blasius.cpp
+share/cantera/samples/cxx/combustor/CMakeLists.txt
+share/cantera/samples/cxx/combustor/SConstruct
+share/cantera/samples/cxx/combustor/combustor.cpp
+share/cantera/samples/cxx/custom/CMakeLists.txt
+share/cantera/samples/cxx/custom/SConstruct
+share/cantera/samples/cxx/custom/custom.cpp
+share/cantera/samples/cxx/demo/CMakeLists.txt
+share/cantera/samples/cxx/demo/SConstruct
+share/cantera/samples/cxx/demo/demo.cpp
+share/cantera/samples/cxx/flamespeed/CMakeLists.txt
+share/cantera/samples/cxx/flamespeed/SConstruct
+share/cantera/samples/cxx/flamespeed/flamespeed.cpp
+share/cantera/samples/cxx/gas_transport/CMakeLists.txt
+share/cantera/samples/cxx/gas_transport/SConstruct
+share/cantera/samples/cxx/gas_transport/gas_transport.cpp
+share/cantera/samples/cxx/jacobian/CMakeLists.txt
+share/cantera/samples/cxx/jacobian/SConstruct
+share/cantera/samples/cxx/jacobian/derivative_speed.cpp
+share/cantera/samples/cxx/kinetics1/CMakeLists.txt
+share/cantera/samples/cxx/kinetics1/SConstruct
+share/cantera/samples/cxx/kinetics1/example_utils.h
+share/cantera/samples/cxx/kinetics1/kinetics1.cpp
+share/cantera/samples/cxx/openmp_ignition/CMakeLists.txt
+share/cantera/samples/cxx/openmp_ignition/SConstruct
+share/cantera/samples/cxx/openmp_ignition/openmp_ignition.cpp
+share/cantera/samples/cxx/rankine/CMakeLists.txt
+share/cantera/samples/cxx/rankine/SConstruct
+share/cantera/samples/cxx/rankine/rankine.cpp
+share/cantera/samples/f77/SConstruct
+share/cantera/samples/f77/ctlib.f
+share/cantera/samples/f77/demo_ftnlib.cpp
+share/cantera/samples/f77/f77_demo.f
+share/cantera/samples/f77/isentropic.f
+share/cantera/samples/f90/CMakeLists.txt
+share/cantera/samples/f90/README.rst
+share/cantera/samples/f90/SConstruct
+share/cantera/samples/f90/demo.f90
+share/cantera/samples/python/README.rst
+share/cantera/samples/python/kinetics/README.rst
+share/cantera/samples/python/kinetics/blowers_masel.py
+share/cantera/samples/python/kinetics/custom_reactions.py
+share/cantera/samples/python/kinetics/diamond_cvd.py
+share/cantera/samples/python/kinetics/extract_submechanism.py
+share/cantera/samples/python/kinetics/interactive_path_diagram.py
+share/cantera/samples/python/kinetics/lithium_ion_battery.py
+share/cantera/samples/python/kinetics/mechanism_reduction.py
+share/cantera/samples/python/kinetics/reaction_path.py
+share/cantera/samples/python/kinetics/sofc.py
+share/cantera/samples/python/onedim/README.rst
+share/cantera/samples/python/onedim/adiabatic_flame.py
+share/cantera/samples/python/onedim/burner_flame.py
+share/cantera/samples/python/onedim/catalytic_combustion.py
+share/cantera/samples/python/onedim/diffusion_flame.py
+share/cantera/samples/python/onedim/diffusion_flame_batch.py
+share/cantera/samples/python/onedim/diffusion_flame_continuation.py
+share/cantera/samples/python/onedim/diffusion_flame_extinction.py
+share/cantera/samples/python/onedim/flame_fixed_T.py
+share/cantera/samples/python/onedim/flame_initial_guess.py
+share/cantera/samples/python/onedim/flame_speed_convergence_analysis.py
+share/cantera/samples/python/onedim/flamespeed_sensitivity.py
+share/cantera/samples/python/onedim/ion_burner_flame.py
+share/cantera/samples/python/onedim/ion_free_flame.py
+share/cantera/samples/python/onedim/premixed_counterflow_flame.py
+share/cantera/samples/python/onedim/premixed_counterflow_twin_flame.py
+share/cantera/samples/python/onedim/stagnation_flame.py
+share/cantera/samples/python/reactors/1D_packed_bed.py
+share/cantera/samples/python/reactors/1D_pfr_surfchem.py
+share/cantera/samples/python/reactors/NonIdealShockTube.py
+share/cantera/samples/python/reactors/PorousMediaBurner.py
+share/cantera/samples/python/reactors/README.rst
+share/cantera/samples/python/reactors/combustor.py
+share/cantera/samples/python/reactors/continuous_reactor.py
+share/cantera/samples/python/reactors/custom.py
+share/cantera/samples/python/reactors/custom2.py
+share/cantera/samples/python/reactors/fuel_injection.py
+share/cantera/samples/python/reactors/ic_engine.py
+share/cantera/samples/python/reactors/mix1.py
+share/cantera/samples/python/reactors/periodic_cstr.py
+share/cantera/samples/python/reactors/pfr.py
+share/cantera/samples/python/reactors/piston.py
+share/cantera/samples/python/reactors/plasma.py
+share/cantera/samples/python/reactors/preconditioned_integration.py
+share/cantera/samples/python/reactors/reactor1.py
+share/cantera/samples/python/reactors/reactor2.py
+share/cantera/samples/python/reactors/sensitivity1.py
+share/cantera/samples/python/reactors/surf_pfr.py
+share/cantera/samples/python/reactors/surf_pfr_chain.py
+share/cantera/samples/python/thermo/README.rst
+share/cantera/samples/python/thermo/adiabatic.py
+share/cantera/samples/python/thermo/coverage_dependent_surf.py
+share/cantera/samples/python/thermo/critical_properties.py
+share/cantera/samples/python/thermo/equations_of_state.py
+share/cantera/samples/python/thermo/equivalenceRatio.py
+share/cantera/samples/python/thermo/isentropic.py
+share/cantera/samples/python/thermo/isentropic_units.py
+share/cantera/samples/python/thermo/mixing.py
+share/cantera/samples/python/thermo/plasma_equilibrium.py
+share/cantera/samples/python/thermo/rankine.py
+share/cantera/samples/python/thermo/rankine_units.py
+share/cantera/samples/python/thermo/sound_speed.py
+share/cantera/samples/python/thermo/sound_speed_units.py
+share/cantera/samples/python/thermo/vapordome.py
+share/cantera/samples/python/transport/README.rst
+share/cantera/samples/python/transport/dusty_gas.py
+share/cantera/samples/python/transport/multiprocessing_viscosity.py
diff --git a/py-cantera/TODO b/py-cantera/TODO
index 07cc921b07..644e603e70 100644
--- a/py-cantera/TODO
+++ b/py-cantera/TODO
@@ -1,4 +1,16 @@
-Requires this in scons4/build.mk
+Requires this in scons4/build.mk since PREFIX option is not supported. (Or
+commenting this line should be fine since we add prefix to build args in
+Makefile.) A systematic solution is needed for this.
 
 	_SCONS_BUILD_ARGS+=     prefix=${PREFIX}
 
+Following warning may be handled by building sundials with blas/lapack
+
+- WARNING: External BLAS/LAPACK has been specified for Cantera but SUNDIALS was built without this support. Cantera will use the slower default solver implementations included with SUNDIALS. You can resolve this warning by installing or building SUNDIALS with BLAS/LAPACK support.
+
+ccache is not getting used - how to tell scons to use one?
+
+Should we be passing buildlink here?
+
+	SCONS_BUILD_ARGS+=      sundials_include=${PREFIX}/include
+	SCONS_BUILD_ARGS+=      sundials_libdir=${PREFIX}/lib
diff --git a/py-cantera/distinfo b/py-cantera/distinfo
index 2f88b4acfc..4bd8d3baf3 100644
--- a/py-cantera/distinfo
+++ b/py-cantera/distinfo
@@ -1,6 +1,9 @@
 $NetBSD$
 
+BLAKE2s (cantera/cantera-cantera-example-data-dbc4212.tar.gz) = 6bef9f5fb052242d1d2da589931ba09fa8f6d67409039de19b20a85129bed23c
+SHA512 (cantera/cantera-cantera-example-data-dbc4212.tar.gz) = 348446b0fc472153a0da2b3981345ad5b294e3586e80860b61ec050e934f88121c612c0baa4f4cd1673127ac55f31e0f7a62ccf8bcd8cb5817925b13b8b32a88
+Size (cantera/cantera-cantera-example-data-dbc4212.tar.gz) = 224214 bytes
 BLAKE2s (cantera/v3.1.0a4.tar.gz) = 43809ea958c6d95d4e4877c27020510b53d921b94b1d65127e301a4ab25077d4
 SHA512 (cantera/v3.1.0a4.tar.gz) = 9083659cfd534f4cc019daddff7ce6fa370d3c79c043ebcc0d9330c52f9bb5d87887e40cbf125e40c853d22a63c759aa19ff05ae74810ebcc943303aeee679d4
 Size (cantera/v3.1.0a4.tar.gz) = 2551741 bytes
-SHA1 (patch-SConstruct) = 440d2da5fcc4c3a7bcbc58c81e3bc82dd7f2265f
+SHA1 (patch-SConstruct) = 92561ff32259595d4254b219dd78e0f6c7a01b89
diff --git a/py-cantera/patches/patch-SConstruct b/py-cantera/patches/patch-SConstruct
index e03b44f981..6f57cd3f8f 100644
--- a/py-cantera/patches/patch-SConstruct
+++ b/py-cantera/patches/patch-SConstruct
@@ -1,6 +1,9 @@
 $NetBSD$
 
---- SConstruct.orig	2024-09-23 15:15:56.609908629 +0000
+1. In pkgsrc, need to pass the entire environment, not just PATH.
+2. Use prefix/man instead of prefix/share/man for man pages in pkgsrc
+
+--- SConstruct.orig	2024-08-18 23:21:57.000000000 +0000
 +++ SConstruct
 @@ -850,7 +850,7 @@ else:
      toolchain = ["default"]
@@ -11,3 +14,12 @@ $NetBSD$
                    toolchain=toolchain,
                    **extraEnvArgs)
  
+@@ -1771,7 +1771,7 @@ else:
+     env["ct_datadir"] = (prefix / "share" / "cantera" / "data").as_posix()
+     env["ct_sampledir"] = (prefix  / "share" / "cantera" / "samples").as_posix()
+     env["ct_docdir"] = (prefix / "share" / "cantera" / "doc").as_posix()
+-    env["ct_mandir"] = (prefix / "share" / "man" / "man1").as_posix()
++    env["ct_mandir"] = (prefix / "man" / "man1").as_posix()
+ 
+ 
+ addInstallActions = ('install' in COMMAND_LINE_TARGETS or
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