fastqc: Add java path patch to repo

[Jason W. Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason W. Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Thu May 23 08:47:14 2024 -0500
Changeset:	796ec18b4b91b0aa6b82d8591fd3f4a29ea67e53

Added Files:
	fastqc/patches/patch-fastqc

Log Message:
fastqc: Add java path patch to repo

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=796ec18b4b91b0aa6b82d8591fd3f4a29ea67e53

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 fastqc/patches/patch-fastqc | 17 +++++++++++++++++
 1 file changed, 17 insertions(+)

diffs:
diff --git a/fastqc/patches/patch-fastqc b/fastqc/patches/patch-fastqc
new file mode 100644
index 0000000000..578ec9b86b
--- /dev/null
+++ b/fastqc/patches/patch-fastqc
@@ -0,0 +1,17 @@
+$NetBSD$
+
+# Add NetBSD java path
+
+--- fastqc.orig	2024-05-23 13:43:30.804486207 +0000
++++ fastqc
+@@ -66,6 +66,10 @@ elsif (-e "$RealBin/jre/bin/java") {
+ elsif (-e "$RealBin/jre/Contents/Home/bin/java") {
+ 	$java_bin = "$RealBin/jre/Contents/Home/bin/java";
+ }
++# NetBSD
++elsif (-e "%%PREFIX%%/java/openjdk11/bin/java") {
++	$java_bin = "%%PREFIX%%/java/openjdk11/bin/java";
++}
+ 
+ 
+ my @java_args;