kallisto: Import portibility patch from FreeBSD port

[Jason W. Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason W. Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Sat Nov 4 08:26:00 2023 -0500
Changeset:	391b17fef376357bda35bfa3802a7648defd742c

Modified Files:
	kallisto/distinfo
Added Files:
	kallisto/patches/patch-src_main.cpp

Log Message:
kallisto: Import portibility patch from FreeBSD port

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=391b17fef376357bda35bfa3802a7648defd742c

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 kallisto/distinfo                   |  1 +
 kallisto/patches/patch-src_main.cpp | 14 ++++++++++++++
 2 files changed, 15 insertions(+)

diffs:
diff --git a/kallisto/distinfo b/kallisto/distinfo
index 64dea90e50..953f9584e0 100644
--- a/kallisto/distinfo
+++ b/kallisto/distinfo
@@ -12,3 +12,4 @@ SHA1 (patch-ext_bifrost_src_strict__fstream.hpp) = a4eab7784c3502fcc79ba0c87d31a
 SHA1 (patch-src_Bootstrap.h) = 29a07a6fbaedf4387b70afb3b2caeb1a9b17f8e8
 SHA1 (patch-src_CMakeLists.txt) = 33d0e3cf985d2e400315788d3ee1c74987a6ebee
 SHA1 (patch-src_kseq.h) = 034e65bdcf5d3851b4e3d65afd06843bdff0d8a9
+SHA1 (patch-src_main.cpp) = 65c9af813f558cebd6086a95b56a499aab02e566
diff --git a/kallisto/patches/patch-src_main.cpp b/kallisto/patches/patch-src_main.cpp
new file mode 100644
index 0000000000..8444447e0c
--- /dev/null
+++ b/kallisto/patches/patch-src_main.cpp
@@ -0,0 +1,14 @@
+$NetBSD$
+
+# Portability
+
+--- src/main.cpp.orig	2023-11-01 12:46:19.000000000 +0000
++++ src/main.cpp
+@@ -11,6 +11,7 @@
+ #include <limits>
+ 
+ #include <cstdio>
++#include <unistd.h>	// rmdir()
+ 
+ #include "common.h"
+ #include "ProcessReads.h"