sra-tools: Progress toward NetBSD build

[Jason W. Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason W. Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Sun Aug 13 13:38:55 2023 -0500
Changeset:	3e6eff27633db76c44cf234b5738bfbcff961756

Modified Files:
	sra-tools/Makefile
	sra-tools/distinfo
	sra-tools/patches/patch-build_env.cmake

Log Message:
sra-tools: Progress toward NetBSD build

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=3e6eff27633db76c44cf234b5738bfbcff961756

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 sra-tools/Makefile                      | 2 ++
 sra-tools/distinfo                      | 2 +-
 sra-tools/patches/patch-build_env.cmake | 4 ++--
 3 files changed, 5 insertions(+), 3 deletions(-)

diffs:
diff --git a/sra-tools/Makefile b/sra-tools/Makefile
index 387e83fe4e..6034ca5f3d 100644
--- a/sra-tools/Makefile
+++ b/sra-tools/Makefile
@@ -66,6 +66,7 @@ USE_CMAKE=	yes
 # Check this
 CMAKE_ARGS+=	-DVDB_LIBDIR:STRING=${WRKSRC}/ncbi-vdb/build/lib
 CMAKE_ARGS+=	-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON
+BUILDLINK_TRANSFORM.NetBSD+=	rm:-ldl	# ncbi-vdb/CMakeLists.posix.txt
 
 EXAMPLESDIR=	${PREFIX}/share/examples/sra-tools
 
@@ -93,6 +94,7 @@ post-install:
 .endif
 
 .include "../../devel/cmake/build.mk"
+.include "../../mk/pthread.buildlink3.mk"
 .include "../../textproc/libxml2/buildlink3.mk"
 .include "../../devel/hdf5/buildlink3.mk"
 .include "../../archivers/zstd/buildlink3.mk"
diff --git a/sra-tools/distinfo b/sra-tools/distinfo
index 3263b218d1..7fdeeb7438 100644
--- a/sra-tools/distinfo
+++ b/sra-tools/distinfo
@@ -6,6 +6,6 @@ Size (outpaddling-ncbi-vdb-802ae6e.tar.gz) = 18977582 bytes
 BLAKE2s (sra-tools-3.0.6-de3d50d111874171766fd017c8cbcf92a9009263.tar.gz) = b1d07bd7eedb1ca76f18e2715570ad52ac93af4999f48629f65a837566b7ead8
 SHA512 (sra-tools-3.0.6-de3d50d111874171766fd017c8cbcf92a9009263.tar.gz) = 1286b69d45b111155152f2431e0bfa358519bb00fa0d1f78b437f16d8ea35d3d8ef7fb43280246c3142511a2b9118f3591aca7753648d8b22f375427adccf34c
 Size (sra-tools-3.0.6-de3d50d111874171766fd017c8cbcf92a9009263.tar.gz) = 44963316 bytes
-SHA1 (patch-build_env.cmake) = 95cd352d4d75122c1125fa87be152d0f847e38af
+SHA1 (patch-build_env.cmake) = 14add56e66e5578fd0d51ce55329285e0981ac4e
 SHA1 (patch-ncbi-vdb_interfaces_os_bsd_byteswap.h) = 2ecc80bca4dd3b0c28b20d1a82c2a315d29bb02c
 SHA1 (patch-ncbi-vdb_interfaces_os_bsd_endian.h) = fa522758b0a122f5da8b3ddc2b98fff1c1d82e33
diff --git a/sra-tools/patches/patch-build_env.cmake b/sra-tools/patches/patch-build_env.cmake
index e3db199688..4b7c4c08af 100644
--- a/sra-tools/patches/patch-build_env.cmake
+++ b/sra-tools/patches/patch-build_env.cmake
@@ -1,8 +1,8 @@
 $NetBSD$
 
-# libstdc++-static is not standard nor easy to install on Alma Linux
+# static standard libs are not standard nor easy to install on Alma Linux
 
---- build/env.cmake.orig	2023-08-13 13:33:25.870195377 +0000
+--- build/env.cmake.orig	2023-08-13 18:06:02.445968665 +0000
 +++ build/env.cmake
 @@ -555,7 +555,7 @@ endfunction()
  function(MakeLinksExe target install_via_driver)