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py-scikit-learn: Add 1.1.0
Module Name: pkgsrc-wip
Committed By: Matthew Danielson <matthewd%fastmail.us@localhost>
Pushed By: matthewd
Date: Sun Jul 3 20:00:12 2022 -0700
Changeset: c067b85d7bd0c5d66d192db838355f2116e08080
Added Files:
py-scikit-learn/DESCR
py-scikit-learn/Makefile
py-scikit-learn/PLIST
py-scikit-learn/TODO
py-scikit-learn/distinfo
Log Message:
py-scikit-learn: Add 1.1.0
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=c067b85d7bd0c5d66d192db838355f2116e08080
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
py-scikit-learn/DESCR | 6 +
py-scikit-learn/Makefile | 36 +
py-scikit-learn/PLIST | 1773 ++++++++++++++++++++++++++++++++++++++++++++++
py-scikit-learn/TODO | 10 +
py-scikit-learn/distinfo | 5 +
5 files changed, 1830 insertions(+)
diffs:
diff --git a/py-scikit-learn/DESCR b/py-scikit-learn/DESCR
new file mode 100644
index 0000000000..887f31351a
--- /dev/null
+++ b/py-scikit-learn/DESCR
@@ -0,0 +1,6 @@
+scikit-learn is a Python module integrating classic machine learning
+algorithms in the tightly-knit scientific Python world (numpy, scipy,
+matplotlib). It aims to provide simple and efficient solutions to
+learning problems, accessible to everybody and reusable in various
+contexts: machine-learning as a versatile tool for science and
+engineering.
diff --git a/py-scikit-learn/Makefile b/py-scikit-learn/Makefile
new file mode 100644
index 0000000000..2c7eecc549
--- /dev/null
+++ b/py-scikit-learn/Makefile
@@ -0,0 +1,36 @@
+# $NetBSD: Makefile,v 1.18 2022/04/10 00:57:15 gutteridge Exp $
+
+DISTNAME= scikit-learn-1.1.1
+PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
+CATEGORIES= math python
+MASTER_SITES= ${MASTER_SITE_PYPI:=s/scikit-learn/}
+
+MAINTAINER= pkgsrc-users%NetBSD.org@localhost
+HOMEPAGE= https://scikit-learn.org/
+COMMENT= Machine learning algorithms for Python
+LICENSE= modified-bsd
+
+DEPENDS+= ${PYPKGPREFIX}-joblib>=0.11:../../devel/py-joblib
+DEPENDS+= ${PYPKGPREFIX}-scipy>=0.17.0:../../math/py-scipy
+DEPENDS+= ${PYPKGPREFIX}-threadpoolctl>=3.1.0:../../wip/py-threadpoolctl
+
+TEST_DEPENDS+= ${PYPKGPREFIX}-test-[0-9]*:../../devel/py-test
+
+USE_LANGUAGES= c c++ fortran
+USE_TOOLS+= gmake
+
+PYTHON_VERSIONS_INCOMPATIBLE= 27 37 # py-scipy
+
+# The setup.py has integration with pytest-runner, but throws odd errors
+TEST_ENV+=PYTHON=python${PYVERSSUFFIX}
+TEST_ENV+=PYTEST=py.test-${PYVERSSUFFIX}
+TEST_ENV+=PYTHONPATH=.
+TEST_ENV+=OPENBLAS_NUM_THREADS=1
+do-test:
+ cd ${WRKSRC} && ${SETENV} ${TEST_ENV} gmake test-code
+
+.include "../../devel/py-cython/buildlink3.mk"
+.include "../../lang/python/egg.mk"
+BUILDLINK_API_DEPENDS.py-numpy+= ${PYPKGPREFIX}-numpy>=1.11.0
+.include "../../math/py-numpy/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/py-scikit-learn/PLIST b/py-scikit-learn/PLIST
new file mode 100644
index 0000000000..56a929c215
--- /dev/null
+++ b/py-scikit-learn/PLIST
@@ -0,0 +1,1773 @@
+@comment $NetBSD$
+${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
+${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
+${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
+${PYSITELIB}/${EGG_INFODIR}/requires.txt
+${PYSITELIB}/${EGG_INFODIR}/top_level.txt
+${PYSITELIB}/sklearn/__check_build/__init__.py
+${PYSITELIB}/sklearn/__check_build/__init__.pyc
+${PYSITELIB}/sklearn/__check_build/__init__.pyo
+${PYSITELIB}/sklearn/__check_build/_check_build.so
+${PYSITELIB}/sklearn/__check_build/setup.py
+${PYSITELIB}/sklearn/__check_build/setup.pyc
+${PYSITELIB}/sklearn/__check_build/setup.pyo
+${PYSITELIB}/sklearn/__init__.py
+${PYSITELIB}/sklearn/__init__.pyc
+${PYSITELIB}/sklearn/__init__.pyo
+${PYSITELIB}/sklearn/_build_utils/__init__.py
+${PYSITELIB}/sklearn/_build_utils/__init__.pyc
+${PYSITELIB}/sklearn/_build_utils/__init__.pyo
+${PYSITELIB}/sklearn/_build_utils/openmp_helpers.py
+${PYSITELIB}/sklearn/_build_utils/openmp_helpers.pyc
+${PYSITELIB}/sklearn/_build_utils/openmp_helpers.pyo
+${PYSITELIB}/sklearn/_build_utils/pre_build_helpers.py
+${PYSITELIB}/sklearn/_build_utils/pre_build_helpers.pyc
+${PYSITELIB}/sklearn/_build_utils/pre_build_helpers.pyo
+${PYSITELIB}/sklearn/_config.py
+${PYSITELIB}/sklearn/_config.pyc
+${PYSITELIB}/sklearn/_config.pyo
+${PYSITELIB}/sklearn/_distributor_init.py
+${PYSITELIB}/sklearn/_distributor_init.pyc
+${PYSITELIB}/sklearn/_distributor_init.pyo
+${PYSITELIB}/sklearn/_isotonic.so
+${PYSITELIB}/sklearn/_loss/__init__.py
+${PYSITELIB}/sklearn/_loss/__init__.pyc
+${PYSITELIB}/sklearn/_loss/__init__.pyo
+${PYSITELIB}/sklearn/_loss/_loss.pxd
+${PYSITELIB}/sklearn/_loss/_loss.so
+${PYSITELIB}/sklearn/_loss/glm_distribution.py
+${PYSITELIB}/sklearn/_loss/glm_distribution.pyc
+${PYSITELIB}/sklearn/_loss/glm_distribution.pyo
+${PYSITELIB}/sklearn/_loss/link.py
+${PYSITELIB}/sklearn/_loss/link.pyc
+${PYSITELIB}/sklearn/_loss/link.pyo
+${PYSITELIB}/sklearn/_loss/loss.py
+${PYSITELIB}/sklearn/_loss/loss.pyc
+${PYSITELIB}/sklearn/_loss/loss.pyo
+${PYSITELIB}/sklearn/_loss/setup.py
+${PYSITELIB}/sklearn/_loss/setup.pyc
+${PYSITELIB}/sklearn/_loss/setup.pyo
+${PYSITELIB}/sklearn/_loss/tests/__init__.py
+${PYSITELIB}/sklearn/_loss/tests/__init__.pyc
+${PYSITELIB}/sklearn/_loss/tests/__init__.pyo
+${PYSITELIB}/sklearn/_loss/tests/test_glm_distribution.py
+${PYSITELIB}/sklearn/_loss/tests/test_glm_distribution.pyc
+${PYSITELIB}/sklearn/_loss/tests/test_glm_distribution.pyo
+${PYSITELIB}/sklearn/_loss/tests/test_link.py
+${PYSITELIB}/sklearn/_loss/tests/test_link.pyc
+${PYSITELIB}/sklearn/_loss/tests/test_link.pyo
+${PYSITELIB}/sklearn/_loss/tests/test_loss.py
+${PYSITELIB}/sklearn/_loss/tests/test_loss.pyc
+${PYSITELIB}/sklearn/_loss/tests/test_loss.pyo
+${PYSITELIB}/sklearn/_min_dependencies.py
+${PYSITELIB}/sklearn/_min_dependencies.pyc
+${PYSITELIB}/sklearn/_min_dependencies.pyo
+${PYSITELIB}/sklearn/base.py
+${PYSITELIB}/sklearn/base.pyc
+${PYSITELIB}/sklearn/base.pyo
+${PYSITELIB}/sklearn/calibration.py
+${PYSITELIB}/sklearn/calibration.pyc
+${PYSITELIB}/sklearn/calibration.pyo
+${PYSITELIB}/sklearn/cluster/__init__.py
+${PYSITELIB}/sklearn/cluster/__init__.pyc
+${PYSITELIB}/sklearn/cluster/__init__.pyo
+${PYSITELIB}/sklearn/cluster/_affinity_propagation.py
+${PYSITELIB}/sklearn/cluster/_affinity_propagation.pyc
+${PYSITELIB}/sklearn/cluster/_affinity_propagation.pyo
+${PYSITELIB}/sklearn/cluster/_agglomerative.py
+${PYSITELIB}/sklearn/cluster/_agglomerative.pyc
+${PYSITELIB}/sklearn/cluster/_agglomerative.pyo
+${PYSITELIB}/sklearn/cluster/_bicluster.py
+${PYSITELIB}/sklearn/cluster/_bicluster.pyc
+${PYSITELIB}/sklearn/cluster/_bicluster.pyo
+${PYSITELIB}/sklearn/cluster/_birch.py
+${PYSITELIB}/sklearn/cluster/_birch.pyc
+${PYSITELIB}/sklearn/cluster/_birch.pyo
+${PYSITELIB}/sklearn/cluster/_bisect_k_means.py
+${PYSITELIB}/sklearn/cluster/_bisect_k_means.pyc
+${PYSITELIB}/sklearn/cluster/_bisect_k_means.pyo
+${PYSITELIB}/sklearn/cluster/_dbscan.py
+${PYSITELIB}/sklearn/cluster/_dbscan.pyc
+${PYSITELIB}/sklearn/cluster/_dbscan.pyo
+${PYSITELIB}/sklearn/cluster/_dbscan_inner.so
+${PYSITELIB}/sklearn/cluster/_feature_agglomeration.py
+${PYSITELIB}/sklearn/cluster/_feature_agglomeration.pyc
+${PYSITELIB}/sklearn/cluster/_feature_agglomeration.pyo
+${PYSITELIB}/sklearn/cluster/_hierarchical_fast.so
+${PYSITELIB}/sklearn/cluster/_k_means_common.pxd
+${PYSITELIB}/sklearn/cluster/_k_means_common.so
+${PYSITELIB}/sklearn/cluster/_k_means_elkan.so
+${PYSITELIB}/sklearn/cluster/_k_means_lloyd.so
+${PYSITELIB}/sklearn/cluster/_k_means_minibatch.so
+${PYSITELIB}/sklearn/cluster/_kmeans.py
+${PYSITELIB}/sklearn/cluster/_kmeans.pyc
+${PYSITELIB}/sklearn/cluster/_kmeans.pyo
+${PYSITELIB}/sklearn/cluster/_mean_shift.py
+${PYSITELIB}/sklearn/cluster/_mean_shift.pyc
+${PYSITELIB}/sklearn/cluster/_mean_shift.pyo
+${PYSITELIB}/sklearn/cluster/_optics.py
+${PYSITELIB}/sklearn/cluster/_optics.pyc
+${PYSITELIB}/sklearn/cluster/_optics.pyo
+${PYSITELIB}/sklearn/cluster/_spectral.py
+${PYSITELIB}/sklearn/cluster/_spectral.pyc
+${PYSITELIB}/sklearn/cluster/_spectral.pyo
+${PYSITELIB}/sklearn/cluster/setup.py
+${PYSITELIB}/sklearn/cluster/setup.pyc
+${PYSITELIB}/sklearn/cluster/setup.pyo
+${PYSITELIB}/sklearn/cluster/tests/__init__.py
+${PYSITELIB}/sklearn/cluster/tests/__init__.pyc
+${PYSITELIB}/sklearn/cluster/tests/__init__.pyo
+${PYSITELIB}/sklearn/cluster/tests/common.py
+${PYSITELIB}/sklearn/cluster/tests/common.pyc
+${PYSITELIB}/sklearn/cluster/tests/common.pyo
+${PYSITELIB}/sklearn/cluster/tests/test_affinity_propagation.py
+${PYSITELIB}/sklearn/cluster/tests/test_affinity_propagation.pyc
+${PYSITELIB}/sklearn/cluster/tests/test_affinity_propagation.pyo
+${PYSITELIB}/sklearn/cluster/tests/test_bicluster.py
+${PYSITELIB}/sklearn/cluster/tests/test_bicluster.pyc
+${PYSITELIB}/sklearn/cluster/tests/test_bicluster.pyo
+${PYSITELIB}/sklearn/cluster/tests/test_birch.py
+${PYSITELIB}/sklearn/cluster/tests/test_birch.pyc
+${PYSITELIB}/sklearn/cluster/tests/test_birch.pyo
+${PYSITELIB}/sklearn/cluster/tests/test_bisect_k_means.py
+${PYSITELIB}/sklearn/cluster/tests/test_bisect_k_means.pyc
+${PYSITELIB}/sklearn/cluster/tests/test_bisect_k_means.pyo
+${PYSITELIB}/sklearn/cluster/tests/test_dbscan.py
+${PYSITELIB}/sklearn/cluster/tests/test_dbscan.pyc
+${PYSITELIB}/sklearn/cluster/tests/test_dbscan.pyo
+${PYSITELIB}/sklearn/cluster/tests/test_feature_agglomeration.py
+${PYSITELIB}/sklearn/cluster/tests/test_feature_agglomeration.pyc
+${PYSITELIB}/sklearn/cluster/tests/test_feature_agglomeration.pyo
+${PYSITELIB}/sklearn/cluster/tests/test_hierarchical.py
+${PYSITELIB}/sklearn/cluster/tests/test_hierarchical.pyc
+${PYSITELIB}/sklearn/cluster/tests/test_hierarchical.pyo
+${PYSITELIB}/sklearn/cluster/tests/test_k_means.py
+${PYSITELIB}/sklearn/cluster/tests/test_k_means.pyc
+${PYSITELIB}/sklearn/cluster/tests/test_k_means.pyo
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+${PYSITELIB}/sklearn/cluster/tests/test_mean_shift.pyc
+${PYSITELIB}/sklearn/cluster/tests/test_mean_shift.pyo
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+${PYSITELIB}/sklearn/cluster/tests/test_optics.pyc
+${PYSITELIB}/sklearn/cluster/tests/test_optics.pyo
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+${PYSITELIB}/sklearn/cluster/tests/test_spectral.pyc
+${PYSITELIB}/sklearn/cluster/tests/test_spectral.pyo
+${PYSITELIB}/sklearn/compose/__init__.py
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+${PYSITELIB}/sklearn/compose/tests/__init__.pyc
+${PYSITELIB}/sklearn/compose/tests/__init__.pyo
+${PYSITELIB}/sklearn/compose/tests/test_column_transformer.py
+${PYSITELIB}/sklearn/compose/tests/test_column_transformer.pyc
+${PYSITELIB}/sklearn/compose/tests/test_column_transformer.pyo
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+${PYSITELIB}/sklearn/compose/tests/test_target.pyc
+${PYSITELIB}/sklearn/compose/tests/test_target.pyo
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+${PYSITELIB}/sklearn/conftest.pyc
+${PYSITELIB}/sklearn/conftest.pyo
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+${PYSITELIB}/sklearn/covariance/_robust_covariance.pyc
+${PYSITELIB}/sklearn/covariance/_robust_covariance.pyo
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+${PYSITELIB}/sklearn/covariance/tests/test_elliptic_envelope.pyo
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+${PYSITELIB}/sklearn/covariance/tests/test_graphical_lasso.pyc
+${PYSITELIB}/sklearn/covariance/tests/test_graphical_lasso.pyo
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+${PYSITELIB}/sklearn/cross_decomposition/__init__.pyc
+${PYSITELIB}/sklearn/cross_decomposition/__init__.pyo
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+${PYSITELIB}/sklearn/datasets/data/__init__.py
+${PYSITELIB}/sklearn/datasets/data/boston_house_prices.csv
+${PYSITELIB}/sklearn/datasets/data/breast_cancer.csv
+${PYSITELIB}/sklearn/datasets/data/diabetes_data_raw.csv.gz
+${PYSITELIB}/sklearn/datasets/data/diabetes_target.csv.gz
+${PYSITELIB}/sklearn/datasets/data/digits.csv.gz
+${PYSITELIB}/sklearn/datasets/data/iris.csv
+${PYSITELIB}/sklearn/datasets/data/linnerud_exercise.csv
+${PYSITELIB}/sklearn/datasets/data/linnerud_physiological.csv
+${PYSITELIB}/sklearn/datasets/data/wine_data.csv
+${PYSITELIB}/sklearn/datasets/descr/__init__.py
+${PYSITELIB}/sklearn/datasets/descr/boston_house_prices.rst
+${PYSITELIB}/sklearn/datasets/descr/breast_cancer.rst
+${PYSITELIB}/sklearn/datasets/descr/california_housing.rst
+${PYSITELIB}/sklearn/datasets/descr/covtype.rst
+${PYSITELIB}/sklearn/datasets/descr/diabetes.rst
+${PYSITELIB}/sklearn/datasets/descr/digits.rst
+${PYSITELIB}/sklearn/datasets/descr/iris.rst
+${PYSITELIB}/sklearn/datasets/descr/kddcup99.rst
+${PYSITELIB}/sklearn/datasets/descr/lfw.rst
+${PYSITELIB}/sklearn/datasets/descr/linnerud.rst
+${PYSITELIB}/sklearn/datasets/descr/olivetti_faces.rst
+${PYSITELIB}/sklearn/datasets/descr/rcv1.rst
+${PYSITELIB}/sklearn/datasets/descr/twenty_newsgroups.rst
+${PYSITELIB}/sklearn/datasets/descr/wine_data.rst
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+${PYSITELIB}/sklearn/datasets/images/china.jpg
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+${PYSITELIB}/sklearn/datasets/setup.pyo
+${PYSITELIB}/sklearn/datasets/tests/__init__.py
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+${PYSITELIB}/sklearn/datasets/tests/conftest.pyo
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diff --git a/py-scikit-learn/TODO b/py-scikit-learn/TODO
new file mode 100644
index 0000000000..ab776512c0
--- /dev/null
+++ b/py-scikit-learn/TODO
@@ -0,0 +1,10 @@
+Investigate why Make test fails:
+sklearn/decomposition/tests/test_kernel_pca.py::test_kernel_pca_consistent_transform Fatal Python error: Aborted
+
+Thread 0x00007f9f24ff9700 (most recent call first):
+ File "/home/matthew/pkgsrc/install.20220701/lib/python3.10/threading.py", line 320 in wait
+ File "/home/matthew/pkgsrc/install.20220701/lib/python3.10/site-packages/joblib/externals/loky/backend/queues.py", line 141 in _feed
+ File "/home/matthew/pkgsrc/install.20220701/lib/python3.10/threading.py", line 953 in run
+ File "/home/matthew/pkgsrc/install.20220701/lib/python3.10/threading.py", line 1016 in _bootstrap_inner
+ File "/home/matthew/pkgsrc/install.20220701/lib/python3.10/threading.py", line 973 in _bootstrap
+
diff --git a/py-scikit-learn/distinfo b/py-scikit-learn/distinfo
new file mode 100644
index 0000000000..25146af3d7
--- /dev/null
+++ b/py-scikit-learn/distinfo
@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.9 2021/10/26 10:56:04 nia Exp $
+
+BLAKE2s (scikit-learn-1.1.1.tar.gz) = e003236f58c91f6fdf9cf26a46a4f1188dc17a367c8e7ab9cf0d885ab139beaf
+SHA512 (scikit-learn-1.1.1.tar.gz) = 56846e6123eb5f46beaa1b71f6d3f0d5ca6b668b69dbc266f598fe5eb375ae80eb5542a277745611db65a12f22a70a9216b3b04ab2b94da5a2797c2fa4746b0d
+Size (scikit-learn-1.1.1.tar.gz) = 6832930 bytes
- Prev by Date:
py-distributed: Updated to 2022.6.2 2022.6.1 Released on June 24, 2022 Highlights This release includes the Worker State Machine refactor. The expectation should be that the worker state is its own synchronous subclass. Pulling all the state out into its own class allows us to write targeted unit tests without invoking any concurrent or asynchronous code. See GH#5736 for more information. Enhancements Make worker state machine methods private (GH#6564) crusaderky Yank state machine out of Worker class (GH#6566) crusaderky Track worker_state_machine.TaskState instances (GH#6525) Hendrik Makait Trivial tweaks to the Worker State Machine (GH#6586) crusaderky Replace loop.call_later and loop.add_callback with background tasks added to Server. (GH#6603) Thomas Grainger Support for neater WorkerState tests (GH#6609) crusaderky Limit TCP writes with Tornado to 2GB (GH#6557) hhuuggoo Enable no_implicit_optional for scheduler (GH#6622) Thomas Grainger Bug Fixes Partial revert of compute-task message format (GH#6626) Florian Jetter Restore log message about received signals in CLI (GH#6618) Florian Jetter Handle empty memoryviews of bytearrays when (de)serializing (GH#6576) Benjamin Zaitlen Ensure steal requests from same-IP but distinct workers are rejected (GH#6585) Florian Jetter Fix tls_(min|max)_ version having no effect on openssl 1.1.0g or lower (GH#6562) Thomas Grainger Fix idle_timeout and unxfail test (GH#6563) Matthew Rocklin Fix crashing debug statement in _purge_state (GH#6589) crusaderky Abort connections on CancelledError (GH#6574) Thomas Grainger Fix Active Memory Manager ignores nbytes thresholds (GH#6583) crusaderky Deprecations Deprecate WorkerState accessors (GH#6579) crusaderky Maintenance Remove ipython hack (GH#6599) crusaderky Mypy enforce --no-implicit-optional (GH#6606) crusaderky Update versioneer: change from using SafeConfigParser to ConfigParser (GH#6605) Thomas A Caswell Warn unreachable for scheduler.py (GH#6611) Florian Jetter Refactor wait_for_state() (GH#6581) crusaderky Hardcode wait_for_signals signal list (GH#6619) Thomas Grainger Always pick an open port when running tests (GH#6591) Florian Jetter Log popen stdout/err when subprocess times out (GH#6567) Gabe Joseph Fix test_error_during_startup (GH#6608) Florian Jetter Make test_idle_timeout_no_workers more robust (GH#6602) Florian Jetter Mypy enforce --disallow-incomplete-defs (GH#6601) crusaderky Do not log during signal handler (GH#6590) Florian Jetter Don’t initialize mp_context on import (GH#6580) Lawrence Mitchell Test retire workers deadlock (GH#6240) Gabe Joseph Rework some tests related to gather_dep (GH#6472) crusaderky Minor cosmetic review of scheduler_story and worker_story (GH#6442) crusaderky Force __future__.annotations with isort (GH#6621) Thomas Grainger 2022.6.0 Released on June 10, 2022 Enhancements Make disk access in system monitor configurable (GH#6537) Matthew Rocklin Log and except errors on preload start (GH#6553) Matthew Rocklin Fix Scheduler.restart logic (GH#6504) Gabe Joseph Don’t heartbeat while Worker is closing (GH#6543) Gabe Joseph No longer retry LocalCluster on errno.EADDRINUSE (GH#6369) Thomas Grainger Don’t invoke log_event from state machine (GH#6512) crusaderky Add config option to disable profiling and disable it in many tests per default (GH#6490) Hendrik Makait Encapsulate Worker.batched_stream.send() (GH#6475) crusaderky Bug Fixes refresh-who-has can break the worker state machine (GH#6529) crusaderky Restart worker if it’s unrecognized by scheduler (GH#6505) Gabe Joseph Fix import error when distributed.rmm.pool-size is set (GH#6482) KoyamaSohei Deprecations Restore signature compatibility for dask-gateway (GH#6561) Tom Augspurger Deprecate the io_loop and loop kwarg to Server, Worker, and Nanny (GH#6473) Thomas Grainger Deprecate the loop kwarg to Scheduler (GH#6443) Thomas Grainger Documentation Fix typo in .nthreads() docstring example (GH#6545) Pavithra Eswaramoorthy Update docs theme for rebranding (GH#6495) Sarah Charlotte Johnson Maintenance Refactor gather_dep (GH#6388) crusaderky Fix flaky test_gather_dep_one_worker_always_busy (GH#6554) crusaderky Remove missing-data message (GH#6546) crusaderky Port test_local.LocalTest to pytest tests to allow use of loop fixture (GH#6523) Thomas Grainger Fix test_quiet_client_close (GH#6541) Gabe Joseph Use default_initializer in WorkerProcess (GH#6534) jakirkham Avoid deadlocks in tests that use popen (GH#6483) Gabe Joseph Revert “Fix CLI Scheduler Tests (GH#6502)” (GH#6547) Gabe Joseph Update test report URL in summary message (GH#6532) Gabe Joseph Update test report url (GH#6531) Ian Rose Assert AsyncProcess.set_exit_callback is not called with a coroutine function (GH#6526) Thomas Grainger Typing and docstring for Worker.close (GH#6518) Hendrik Makait Fix CLI Scheduler Tests (GH#6502) Benjamin Zaitlen Collect assertions in test_as_current_is_thread_local (GH#6520) Thomas Grainger Link test report from test results comment (GH#6524) Hendrik Makait Ignore the return value of signal.signal (GH#6519) Thomas Grainger Refactor all event handlers (GH#6410) crusaderky Fix dashboard favicon background (GH#6514) Jacob Tomlinson Update dashboard logo (GH#6513) Jacob Tomlinson Fix test_stress_scatter_death (GH#6404) Florian Jetter Remove CrossFilter widget (GH#6484) crusaderky data_needed exclusively contains tasks in fetch state (GH#6481) crusaderky Assert possible previous states (GH#6488) Florian Jetter @fail_hard can kill the whole test suite; hide errors (GH#6474) crusaderky Assert that a fetch->cancelled->resumed->fetch cycle is impossible (GH#6460) crusaderky Refactor busy workers reinsertion (GH#6379) crusaderky Refactor find_missing and refresh_who_has (GH#6348) crusaderky Rename test_collections.py to test_dask_collections.py (GH#6486) crusaderky update_who_has can remove workers (GH#6342) crusaderky Restructure test_watch_requires_lock_to_run to avoid flakes (GH#6469) Hendrik Makait Fix intermittent test_profile_plot failure (GH#6456) Matthew Rocklin Use asyncio.run to run gen_cluster, gen_test and cluster (GH#6231) Thomas Grainger Improve tests that watch for subprocess logs (GH#6461) Gabe Joseph 2022.05.2 Released on May 26, 2022 Enhancements Add a lock to distributed.profile for better concurrency control (GH#6421) Hendrik Makait Send SIGKILL after SIGTERM when passing 95% memory (GH#6419) crusaderky Bug Fixes Log rather than raise exceptions in preload.teardown() (GH#6458) Matthew Rocklin Handle failing plugin.close() calls during scheduler shutdown (GH#6450) Matthew Rocklin Fix slicing bug in ensure_memoryview (GH#6449) jakirkham Generalize UCX errors on connect() and correct pytest fixtures (GH#6434) Peter Andreas Entschev Run cluster widget periodic callbacks on the correct event loop (GH#6444) Thomas Grainger Maintenance Disable pytest-asyncio if installed (GH#6436) Jacob Tomlinson Close client in sync test_actor tests (GH#6459) Thomas Grainger Ignore ServerSession.with_document_locked unawaited (GH#6447) Thomas Grainger Remove coverage pin from Python 3.10 environment (GH#6439) Thomas Grainger Annotate remove_worker (GH#6441) crusaderky Update gpuCI RAPIDS_VER to 22.08 (GH#6428) 2022.05.1 Released on May 24, 2022 New Features Add HTTP API to scheduler (GH#6270) Matthew Murray Shuffle Service with Scheduler Logic (GH#6007) Matthew Rocklin Enhancements Follow-up on removing report and safe from Worker.close (GH#6423) Gabe Joseph Server close faster (GH#6415) Florian Jetter Disable HTTP API by default (GH#6420) Jacob Tomlinson Remove report and safe from Worker.close (GH#6363) Florian Jetter Allow deserialized plugins in register_scheduler_plugin (GH#6401) Matthew Rocklin WorkerState are different for different addresses (GH#6398) Florian Jetter Do not filter tasks before gathering data (GH#6371) crusaderky Remove worker reconnect (GH#6361) Gabe Joseph Add SchedulerPlugin.log_event handler (GH#6381) Matthew Rocklin Ensure occupancy tracking works as expected for long running tasks (GH#6351) Florian Jetter stimulus_id for all Instructions (GH#6347) crusaderky Refactor missing-data command (GH#6332) crusaderky Add idempotent to register_scheduler_plugin client (GH#6328) Alex Ford Add option to specify a scheduler address for workers to use (GH#5944) Enric Tejedor Bug Fixes Remove stray breakpoint (GH#6417) Thomas Grainger Fix API JSON MIME type (GH#6397) Jacob Tomlinson Remove wrong assert in handle compute (GH#6370) Florian Jetter Ensure multiple clients can cancel their key without interference (GH#6016) Florian Jetter Fix Nanny shutdown assertion (GH#6357) Gabe Joseph Fix fail_hard for sync functions (GH#6269) Gabe Joseph Prevent infinite transition loops; more aggressive validate_state() (GH#6318) crusaderky Ensure cleanup of many GBs of spilled data on terminate (GH#6280) crusaderky Fix WORKER_ANY_RUNNING regression (GH#6297) Florian Jetter Race conditions from fetch to compute while AMM requests replica (GH#6248) Florian Jetter Ensure resumed tasks are not accidentally forgotten (GH#6217) Florian Jetter Do not allow closing workers to be awaited again (GH#5910) Florian Jetter Deprecations Move wait_for_signals to private module and deprecate distributed.cli.utils (GH#6367) Hendrik Makait Documentation Fix typos and whitespace in worker.py (GH#6326) Hendrik Makait Fix link to memory trimming documentation (GH#6317) Marco Wolsza Maintenance Make gen_test show up in VSCode test discovery (GH#6424) Gabe Joseph WSMR / deserialize_task (GH#6411) crusaderky Restore signal handlers after wait for signals is done (GH#6400) Thomas Grainger fail_hard should reraise (GH#6399) crusaderky Revisit tests mocking gather_dep (GH#6385) crusaderky Fix flaky test_in_flight_lost_after_resumed (GH#6372) Florian Jetter Restore install_signal_handlers due to downstream dependencies (GH#6366) Hendrik Makait Improve catch_unhandled_exceptions (GH#6358) Gabe Joseph Remove all invocations of IOLoop.run_sync from CLI (GH#6205) Hendrik Makait Remove transition-counter-max from config (GH#6349) crusaderky Use list comprehension in pickle_loads (GH#6343) jakirkham Improve ensure_memoryview test coverage & make minor fixes (GH#6333) jakirkham Remove leaking reference to workers from gen_cluster (GH#6337) Hendrik Makait Partial annotations for stealing.py (GH#6338) crusaderky Validate and debug state machine on handle_compute_task (GH#6327) crusaderky Bump pyupgrade and clean up # type: ignore (GH#6293) crusaderky gen_cluster to write to /tmp (GH#6335) crusaderky Transition table as a ClassVar (GH#6331) crusaderky Simplify ensure_memoryview test with array (GH#6322) jakirkham Refactor ensure_communicating (GH#6165) crusaderky Review scheduler annotations, part 2 (GH#6253) crusaderky Use w for writeable branch in pickle_loads (GH#6314) jakirkham Simplify frame handling in ws (GH#6294) jakirkham Use ensure_bytes from dask.utils (GH#6295) jakirkham Use ensure_memoryview in array deserialization (GH#6300) jakirkham Escape < > when generating Junit report (GH#6306) crusaderky Use codecs.decode to deserialize errors (GH#6274) jakirkham Minimize copying in maybe_compress & byte_sample (GH#6273) jakirkham Skip test_release_evloop_while_spilling on OSX (GH#6291) Florian Jetter Simplify logic in get_default_compression (GH#6260) jakirkham Cleanup old compression workarounds (GH#6259) jakirkham Re-enable NVML monitoring for WSL (GH#6119) Charles Blackmon-Luca
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Patched for pthread_condattr_setpshared, pthread_mutexattr_setpshared
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py-distributed: Updated to 2022.6.2 2022.6.1 Released on June 24, 2022 Highlights This release includes the Worker State Machine refactor. The expectation should be that the worker state is its own synchronous subclass. Pulling all the state out into its own class allows us to write targeted unit tests without invoking any concurrent or asynchronous code. See GH#5736 for more information. Enhancements Make worker state machine methods private (GH#6564) crusaderky Yank state machine out of Worker class (GH#6566) crusaderky Track worker_state_machine.TaskState instances (GH#6525) Hendrik Makait Trivial tweaks to the Worker State Machine (GH#6586) crusaderky Replace loop.call_later and loop.add_callback with background tasks added to Server. (GH#6603) Thomas Grainger Support for neater WorkerState tests (GH#6609) crusaderky Limit TCP writes with Tornado to 2GB (GH#6557) hhuuggoo Enable no_implicit_optional for scheduler (GH#6622) Thomas Grainger Bug Fixes Partial revert of compute-task message format (GH#6626) Florian Jetter Restore log message about received signals in CLI (GH#6618) Florian Jetter Handle empty memoryviews of bytearrays when (de)serializing (GH#6576) Benjamin Zaitlen Ensure steal requests from same-IP but distinct workers are rejected (GH#6585) Florian Jetter Fix tls_(min|max)_ version having no effect on openssl 1.1.0g or lower (GH#6562) Thomas Grainger Fix idle_timeout and unxfail test (GH#6563) Matthew Rocklin Fix crashing debug statement in _purge_state (GH#6589) crusaderky Abort connections on CancelledError (GH#6574) Thomas Grainger Fix Active Memory Manager ignores nbytes thresholds (GH#6583) crusaderky Deprecations Deprecate WorkerState accessors (GH#6579) crusaderky Maintenance Remove ipython hack (GH#6599) crusaderky Mypy enforce --no-implicit-optional (GH#6606) crusaderky Update versioneer: change from using SafeConfigParser to ConfigParser (GH#6605) Thomas A Caswell Warn unreachable for scheduler.py (GH#6611) Florian Jetter Refactor wait_for_state() (GH#6581) crusaderky Hardcode wait_for_signals signal list (GH#6619) Thomas Grainger Always pick an open port when running tests (GH#6591) Florian Jetter Log popen stdout/err when subprocess times out (GH#6567) Gabe Joseph Fix test_error_during_startup (GH#6608) Florian Jetter Make test_idle_timeout_no_workers more robust (GH#6602) Florian Jetter Mypy enforce --disallow-incomplete-defs (GH#6601) crusaderky Do not log during signal handler (GH#6590) Florian Jetter Don’t initialize mp_context on import (GH#6580) Lawrence Mitchell Test retire workers deadlock (GH#6240) Gabe Joseph Rework some tests related to gather_dep (GH#6472) crusaderky Minor cosmetic review of scheduler_story and worker_story (GH#6442) crusaderky Force __future__.annotations with isort (GH#6621) Thomas Grainger 2022.6.0 Released on June 10, 2022 Enhancements Make disk access in system monitor configurable (GH#6537) Matthew Rocklin Log and except errors on preload start (GH#6553) Matthew Rocklin Fix Scheduler.restart logic (GH#6504) Gabe Joseph Don’t heartbeat while Worker is closing (GH#6543) Gabe Joseph No longer retry LocalCluster on errno.EADDRINUSE (GH#6369) Thomas Grainger Don’t invoke log_event from state machine (GH#6512) crusaderky Add config option to disable profiling and disable it in many tests per default (GH#6490) Hendrik Makait Encapsulate Worker.batched_stream.send() (GH#6475) crusaderky Bug Fixes refresh-who-has can break the worker state machine (GH#6529) crusaderky Restart worker if it’s unrecognized by scheduler (GH#6505) Gabe Joseph Fix import error when distributed.rmm.pool-size is set (GH#6482) KoyamaSohei Deprecations Restore signature compatibility for dask-gateway (GH#6561) Tom Augspurger Deprecate the io_loop and loop kwarg to Server, Worker, and Nanny (GH#6473) Thomas Grainger Deprecate the loop kwarg to Scheduler (GH#6443) Thomas Grainger Documentation Fix typo in .nthreads() docstring example (GH#6545) Pavithra Eswaramoorthy Update docs theme for rebranding (GH#6495) Sarah Charlotte Johnson Maintenance Refactor gather_dep (GH#6388) crusaderky Fix flaky test_gather_dep_one_worker_always_busy (GH#6554) crusaderky Remove missing-data message (GH#6546) crusaderky Port test_local.LocalTest to pytest tests to allow use of loop fixture (GH#6523) Thomas Grainger Fix test_quiet_client_close (GH#6541) Gabe Joseph Use default_initializer in WorkerProcess (GH#6534) jakirkham Avoid deadlocks in tests that use popen (GH#6483) Gabe Joseph Revert “Fix CLI Scheduler Tests (GH#6502)” (GH#6547) Gabe Joseph Update test report URL in summary message (GH#6532) Gabe Joseph Update test report url (GH#6531) Ian Rose Assert AsyncProcess.set_exit_callback is not called with a coroutine function (GH#6526) Thomas Grainger Typing and docstring for Worker.close (GH#6518) Hendrik Makait Fix CLI Scheduler Tests (GH#6502) Benjamin Zaitlen Collect assertions in test_as_current_is_thread_local (GH#6520) Thomas Grainger Link test report from test results comment (GH#6524) Hendrik Makait Ignore the return value of signal.signal (GH#6519) Thomas Grainger Refactor all event handlers (GH#6410) crusaderky Fix dashboard favicon background (GH#6514) Jacob Tomlinson Update dashboard logo (GH#6513) Jacob Tomlinson Fix test_stress_scatter_death (GH#6404) Florian Jetter Remove CrossFilter widget (GH#6484) crusaderky data_needed exclusively contains tasks in fetch state (GH#6481) crusaderky Assert possible previous states (GH#6488) Florian Jetter @fail_hard can kill the whole test suite; hide errors (GH#6474) crusaderky Assert that a fetch->cancelled->resumed->fetch cycle is impossible (GH#6460) crusaderky Refactor busy workers reinsertion (GH#6379) crusaderky Refactor find_missing and refresh_who_has (GH#6348) crusaderky Rename test_collections.py to test_dask_collections.py (GH#6486) crusaderky update_who_has can remove workers (GH#6342) crusaderky Restructure test_watch_requires_lock_to_run to avoid flakes (GH#6469) Hendrik Makait Fix intermittent test_profile_plot failure (GH#6456) Matthew Rocklin Use asyncio.run to run gen_cluster, gen_test and cluster (GH#6231) Thomas Grainger Improve tests that watch for subprocess logs (GH#6461) Gabe Joseph 2022.05.2 Released on May 26, 2022 Enhancements Add a lock to distributed.profile for better concurrency control (GH#6421) Hendrik Makait Send SIGKILL after SIGTERM when passing 95% memory (GH#6419) crusaderky Bug Fixes Log rather than raise exceptions in preload.teardown() (GH#6458) Matthew Rocklin Handle failing plugin.close() calls during scheduler shutdown (GH#6450) Matthew Rocklin Fix slicing bug in ensure_memoryview (GH#6449) jakirkham Generalize UCX errors on connect() and correct pytest fixtures (GH#6434) Peter Andreas Entschev Run cluster widget periodic callbacks on the correct event loop (GH#6444) Thomas Grainger Maintenance Disable pytest-asyncio if installed (GH#6436) Jacob Tomlinson Close client in sync test_actor tests (GH#6459) Thomas Grainger Ignore ServerSession.with_document_locked unawaited (GH#6447) Thomas Grainger Remove coverage pin from Python 3.10 environment (GH#6439) Thomas Grainger Annotate remove_worker (GH#6441) crusaderky Update gpuCI RAPIDS_VER to 22.08 (GH#6428) 2022.05.1 Released on May 24, 2022 New Features Add HTTP API to scheduler (GH#6270) Matthew Murray Shuffle Service with Scheduler Logic (GH#6007) Matthew Rocklin Enhancements Follow-up on removing report and safe from Worker.close (GH#6423) Gabe Joseph Server close faster (GH#6415) Florian Jetter Disable HTTP API by default (GH#6420) Jacob Tomlinson Remove report and safe from Worker.close (GH#6363) Florian Jetter Allow deserialized plugins in register_scheduler_plugin (GH#6401) Matthew Rocklin WorkerState are different for different addresses (GH#6398) Florian Jetter Do not filter tasks before gathering data (GH#6371) crusaderky Remove worker reconnect (GH#6361) Gabe Joseph Add SchedulerPlugin.log_event handler (GH#6381) Matthew Rocklin Ensure occupancy tracking works as expected for long running tasks (GH#6351) Florian Jetter stimulus_id for all Instructions (GH#6347) crusaderky Refactor missing-data command (GH#6332) crusaderky Add idempotent to register_scheduler_plugin client (GH#6328) Alex Ford Add option to specify a scheduler address for workers to use (GH#5944) Enric Tejedor Bug Fixes Remove stray breakpoint (GH#6417) Thomas Grainger Fix API JSON MIME type (GH#6397) Jacob Tomlinson Remove wrong assert in handle compute (GH#6370) Florian Jetter Ensure multiple clients can cancel their key without interference (GH#6016) Florian Jetter Fix Nanny shutdown assertion (GH#6357) Gabe Joseph Fix fail_hard for sync functions (GH#6269) Gabe Joseph Prevent infinite transition loops; more aggressive validate_state() (GH#6318) crusaderky Ensure cleanup of many GBs of spilled data on terminate (GH#6280) crusaderky Fix WORKER_ANY_RUNNING regression (GH#6297) Florian Jetter Race conditions from fetch to compute while AMM requests replica (GH#6248) Florian Jetter Ensure resumed tasks are not accidentally forgotten (GH#6217) Florian Jetter Do not allow closing workers to be awaited again (GH#5910) Florian Jetter Deprecations Move wait_for_signals to private module and deprecate distributed.cli.utils (GH#6367) Hendrik Makait Documentation Fix typos and whitespace in worker.py (GH#6326) Hendrik Makait Fix link to memory trimming documentation (GH#6317) Marco Wolsza Maintenance Make gen_test show up in VSCode test discovery (GH#6424) Gabe Joseph WSMR / deserialize_task (GH#6411) crusaderky Restore signal handlers after wait for signals is done (GH#6400) Thomas Grainger fail_hard should reraise (GH#6399) crusaderky Revisit tests mocking gather_dep (GH#6385) crusaderky Fix flaky test_in_flight_lost_after_resumed (GH#6372) Florian Jetter Restore install_signal_handlers due to downstream dependencies (GH#6366) Hendrik Makait Improve catch_unhandled_exceptions (GH#6358) Gabe Joseph Remove all invocations of IOLoop.run_sync from CLI (GH#6205) Hendrik Makait Remove transition-counter-max from config (GH#6349) crusaderky Use list comprehension in pickle_loads (GH#6343) jakirkham Improve ensure_memoryview test coverage & make minor fixes (GH#6333) jakirkham Remove leaking reference to workers from gen_cluster (GH#6337) Hendrik Makait Partial annotations for stealing.py (GH#6338) crusaderky Validate and debug state machine on handle_compute_task (GH#6327) crusaderky Bump pyupgrade and clean up # type: ignore (GH#6293) crusaderky gen_cluster to write to /tmp (GH#6335) crusaderky Transition table as a ClassVar (GH#6331) crusaderky Simplify ensure_memoryview test with array (GH#6322) jakirkham Refactor ensure_communicating (GH#6165) crusaderky Review scheduler annotations, part 2 (GH#6253) crusaderky Use w for writeable branch in pickle_loads (GH#6314) jakirkham Simplify frame handling in ws (GH#6294) jakirkham Use ensure_bytes from dask.utils (GH#6295) jakirkham Use ensure_memoryview in array deserialization (GH#6300) jakirkham Escape < > when generating Junit report (GH#6306) crusaderky Use codecs.decode to deserialize errors (GH#6274) jakirkham Minimize copying in maybe_compress & byte_sample (GH#6273) jakirkham Skip test_release_evloop_while_spilling on OSX (GH#6291) Florian Jetter Simplify logic in get_default_compression (GH#6260) jakirkham Cleanup old compression workarounds (GH#6259) jakirkham Re-enable NVML monitoring for WSL (GH#6119) Charles Blackmon-Luca
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Patched for pthread_condattr_setpshared, pthread_mutexattr_setpshared
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