biolibc: Update to 0.2.2.23

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Sat Apr 30 07:14:34 2022 -0500
Changeset:	fa68cb4b0361031440dde38a4731e42c73f757e0

Modified Files:
	biolibc/Makefile
	biolibc/PLIST
	biolibc/buildlink3.mk
	biolibc/distinfo

Log Message:
biolibc: Update to 0.2.2.23

sam.c: Switch cigar from static array to dynamic
Clean up code

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=fa68cb4b0361031440dde38a4731e42c73f757e0

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 biolibc/Makefile      | 4 ++--
 biolibc/PLIST         | 9 +++++++++
 biolibc/buildlink3.mk | 2 +-
 biolibc/distinfo      | 6 +++---
 4 files changed, 15 insertions(+), 6 deletions(-)

diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index 7f378aeaeb..bae4aad270 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
 # $NetBSD$
 
-DISTNAME=	biolibc-0.2.2.22
+DISTNAME=	biolibc-0.2.2.23
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=	9f81efe6957bb1e5a6847e24cca64a3b5f644590
+GITHUB_TAG=	e8247c26985c64aea9b77dd292b5d79c43a393bc
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 HOMEPAGE=	https://github.com/auerlab/biolibc
diff --git a/biolibc/PLIST b/biolibc/PLIST
index 15c90bb10c..52d0648646 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -171,6 +171,8 @@ man/man3/BL_SAM_BUFF_TRAILING_ALIGNMENTS.3
 man/man3/BL_SAM_BUFF_UNMAPPED_ALIGNMENTS.3
 man/man3/BL_SAM_CIGAR.3
 man/man3/BL_SAM_CIGAR_AE.3
+man/man3/BL_SAM_CIGAR_ARRAY_SIZE.3
+man/man3/BL_SAM_CIGAR_LEN.3
 man/man3/BL_SAM_FLAG.3
 man/man3/BL_SAM_MAPQ.3
 man/man3/BL_SAM_PNEXT.3
@@ -179,6 +181,7 @@ man/man3/BL_SAM_QNAME.3
 man/man3/BL_SAM_QNAME_AE.3
 man/man3/BL_SAM_QUAL.3
 man/man3/BL_SAM_QUAL_AE.3
+man/man3/BL_SAM_QUAL_ARRAY_SIZE.3
 man/man3/BL_SAM_QUAL_LEN.3
 man/man3/BL_SAM_RNAME.3
 man/man3/BL_SAM_RNAME_AE.3
@@ -186,6 +189,7 @@ man/man3/BL_SAM_RNEXT.3
 man/man3/BL_SAM_RNEXT_AE.3
 man/man3/BL_SAM_SEQ.3
 man/man3/BL_SAM_SEQ_AE.3
+man/man3/BL_SAM_SEQ_ARRAY_SIZE.3
 man/man3/BL_SAM_SEQ_LEN.3
 man/man3/BL_SAM_TLEN.3
 man/man3/BL_VCF_ALT.3
@@ -431,8 +435,11 @@ man/man3/bl_sam_gff_cmp.3
 man/man3/bl_sam_gff_overlap.3
 man/man3/bl_sam_init.3
 man/man3/bl_sam_read.3
+man/man3/bl_sam_set_cigar.3
 man/man3/bl_sam_set_cigar_ae.3
+man/man3/bl_sam_set_cigar_array_size.3
 man/man3/bl_sam_set_cigar_cpy.3
+man/man3/bl_sam_set_cigar_len.3
 man/man3/bl_sam_set_flag.3
 man/man3/bl_sam_set_mapq.3
 man/man3/bl_sam_set_pnext.3
@@ -441,6 +448,7 @@ man/man3/bl_sam_set_qname_ae.3
 man/man3/bl_sam_set_qname_cpy.3
 man/man3/bl_sam_set_qual.3
 man/man3/bl_sam_set_qual_ae.3
+man/man3/bl_sam_set_qual_array_size.3
 man/man3/bl_sam_set_qual_cpy.3
 man/man3/bl_sam_set_qual_len.3
 man/man3/bl_sam_set_rname_ae.3
@@ -449,6 +457,7 @@ man/man3/bl_sam_set_rnext_ae.3
 man/man3/bl_sam_set_rnext_cpy.3
 man/man3/bl_sam_set_seq.3
 man/man3/bl_sam_set_seq_ae.3
+man/man3/bl_sam_set_seq_array_size.3
 man/man3/bl_sam_set_seq_cpy.3
 man/man3/bl_sam_set_seq_len.3
 man/man3/bl_sam_set_tlen.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index b2fd1c628d..ffca7a5efe 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+=	biolibc
 .if !defined(BIOLIBC_BUILDLINK3_MK)
 BIOLIBC_BUILDLINK3_MK:=
 
-BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.2.22
+BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.2.23
 BUILDLINK_PKGSRCDIR.biolibc?=	../../wip/biolibc
 
 .include "../../wip/libxtend/buildlink3.mk"
diff --git a/biolibc/distinfo b/biolibc/distinfo
index 5f389a817a..e50f60d615 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,5 +1,5 @@
 $NetBSD$
 
-BLAKE2s (biolibc-0.2.2.22-9f81efe6957bb1e5a6847e24cca64a3b5f644590.tar.gz) = 6c59cecb939a7f8f0e9c29b73c8e449840e05eb456f98739c8d61230a3c61cf2
-SHA512 (biolibc-0.2.2.22-9f81efe6957bb1e5a6847e24cca64a3b5f644590.tar.gz) = f6c1155629ba4270e4910b57f445d32be81a2ff9f7738a1af697f5dc5f970d64da1389f97723b287d5921cde0c7302aa6e99d7ca92185160c38e9b97d5652121
-Size (biolibc-0.2.2.22-9f81efe6957bb1e5a6847e24cca64a3b5f644590.tar.gz) = 138787 bytes
+BLAKE2s (biolibc-0.2.2.23-e8247c26985c64aea9b77dd292b5d79c43a393bc.tar.gz) = 834d52faaed15c0b30ea37f222e0e20bc6d13b9ceef5733a10b33fad0fea84ab
+SHA512 (biolibc-0.2.2.23-e8247c26985c64aea9b77dd292b5d79c43a393bc.tar.gz) = 5fdaf47085e7f06902f53c6655026bf542f08febe35d4238e95521ff6bb0fc5455c151a7a49b91118c4d53dc889da3f84aacf70abf45adc3db21ba5a272d1ec7
+Size (biolibc-0.2.2.23-e8247c26985c64aea9b77dd292b5d79c43a393bc.tar.gz) = 139881 bytes