biolibc: Update to 0.2.2.6

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Tue Apr 5 17:07:51 2022 -0500
Changeset:	df952c72c150ff99198c7fc7e107d8a037dd83c3

Modified Files:
	biolibc/Makefile
	biolibc/PLIST
	biolibc/buildlink3.mk
	biolibc/distinfo

Log Message:
biolibc: Update to 0.2.2.6

bl_sam_read(): Use tsv_read_field_malloc() for seq and qual
Add bl_sam_open() and bl_sam_close() (pipe through samtools view)

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=df952c72c150ff99198c7fc7e107d8a037dd83c3

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 biolibc/Makefile      | 4 ++--
 biolibc/PLIST         | 2 ++
 biolibc/buildlink3.mk | 2 +-
 biolibc/distinfo      | 6 +++---
 4 files changed, 8 insertions(+), 6 deletions(-)

diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index 89156cb871..1e8bbf73eb 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
 # $NetBSD$
 
-DISTNAME=	biolibc-0.2.2.3
+DISTNAME=	biolibc-0.2.2.6
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=	6f50628fbb15159115e2c6204bfe4f8a3efabb4c
+GITHUB_TAG=	c2f87f4ef47fb9034c45b5122304921b95cb719e
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 HOMEPAGE=	https://github.com/auerlab/biolibc
diff --git a/biolibc/PLIST b/biolibc/PLIST
index 7cd9d4459a..8267e1a602 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -400,6 +400,8 @@ man/man3/bl_sam_buff_set_trailing_alignments.3
 man/man3/bl_sam_buff_set_unmapped_alignments.3
 man/man3/bl_sam_buff_shift.3
 man/man3/bl_sam_copy.3
+man/man3/bl_sam_fclose.3
+man/man3/bl_sam_fopen.3
 man/man3/bl_sam_free.3
 man/man3/bl_sam_init.3
 man/man3/bl_sam_read.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index dba32cc9dc..59aae988aa 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+=	biolibc
 .if !defined(BIOLIBC_BUILDLINK3_MK)
 BIOLIBC_BUILDLINK3_MK:=
 
-BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.2
+BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.2.6
 BUILDLINK_PKGSRCDIR.biolibc?=	../../wip/biolibc
 
 .include "../../wip/libxtend/buildlink3.mk"
diff --git a/biolibc/distinfo b/biolibc/distinfo
index d32190d289..71f13d4b1e 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,5 +1,5 @@
 $NetBSD$
 
-BLAKE2s (biolibc-0.2.2.3-6f50628fbb15159115e2c6204bfe4f8a3efabb4c.tar.gz) = 0339ce5abe7dac817977656133cd75028d7989f5e1159d437d35166ffe74ccff
-SHA512 (biolibc-0.2.2.3-6f50628fbb15159115e2c6204bfe4f8a3efabb4c.tar.gz) = 991522682c49cdd4c3e39516995c426d85d5eab5820e977b0688237f5038cd37ca625e8bdfcb658951aefe6cbd96a4d8aaf43fa811875520581101a710c59401
-Size (biolibc-0.2.2.3-6f50628fbb15159115e2c6204bfe4f8a3efabb4c.tar.gz) = 129352 bytes
+BLAKE2s (biolibc-0.2.2.6-c2f87f4ef47fb9034c45b5122304921b95cb719e.tar.gz) = adbc94764ed89b07ede89a84a85dc1a54fb1900ae5d8452dbb1b11c29a4c4331
+SHA512 (biolibc-0.2.2.6-c2f87f4ef47fb9034c45b5122304921b95cb719e.tar.gz) = 71a81046159069d5e4cd667d0851b07af2f8d942545a19089361f9d362a41107720c680a60ede392c1502f82797b60c599e88be125b34420699512b315d090d0
+Size (biolibc-0.2.2.6-c2f87f4ef47fb9034c45b5122304921b95cb719e.tar.gz) = 130321 bytes