gtextutils, fastx-toolkit: Update to latest commit

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Sun Apr 3 07:47:37 2022 -0500
Changeset:	8e07d21aa41b965278dd4f8d8bd3cdb199f2c43d

Modified Files:
	fastx-toolkit/Makefile
	fastx-toolkit/distinfo
	gtextutils/Makefile
	gtextutils/distinfo
Removed Files:
	gtextutils/patches/patch-src_gtextutils_text__line__reader.cpp

Log Message:
gtextutils, fastx-toolkit: Update to latest commit

These are unmaintained, but still useful

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=8e07d21aa41b965278dd4f8d8bd3cdb199f2c43d

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 fastx-toolkit/Makefile                                    |  3 ++-
 fastx-toolkit/distinfo                                    |  7 ++++---
 gtextutils/Makefile                                       |  8 ++++++--
 gtextutils/distinfo                                       |  7 +++----
 .../patches/patch-src_gtextutils_text__line__reader.cpp   | 15 ---------------
 5 files changed, 15 insertions(+), 25 deletions(-)

diffs:
diff --git a/fastx-toolkit/Makefile b/fastx-toolkit/Makefile
index a8b608116c..0a9cfb5979 100644
--- a/fastx-toolkit/Makefile
+++ b/fastx-toolkit/Makefile
@@ -5,10 +5,11 @@
 #              Mon Jan  7 19:28:31 CST 2019               #
 ###########################################################
 
-DISTNAME=	fastx_toolkit-0.0.14
+DISTNAME=	fastx_toolkit-0.0.14.6
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=agordon/}
 GITHUB_PROJECT=	fastx_toolkit
+GITHUB_TAG=	ea0ca83ba24dce80c20ca589b838a281fe5deb0c
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 HOMEPAGE=	http://hannonlab.cshl.edu/fastx_toolkit/
diff --git a/fastx-toolkit/distinfo b/fastx-toolkit/distinfo
index f8ab2cd704..a5b0fa87ee 100644
--- a/fastx-toolkit/distinfo
+++ b/fastx-toolkit/distinfo
@@ -1,6 +1,7 @@
 $NetBSD$
 
-RMD160 (fastx_toolkit-0.0.14.tar.gz) = 759a34c6e30f96eeef415dc832ec4a518866be09
-SHA512 (fastx_toolkit-0.0.14.tar.gz) = d8e18a3622dcdb5b543fcb787818ac468b26341d5d4409326c951b504862eb44226f625228985bec6fb2e02c45f9a127591a312dadd53415337a7c09f6229708
-Size (fastx_toolkit-0.0.14.tar.gz) = 259576 bytes
+BLAKE2s (fastx_toolkit-0.0.14.6-ea0ca83ba24dce80c20ca589b838a281fe5deb0c.tar.gz) = 973b56d722a2796aa28a04de56ef9273ce5a99fae5cf40bdbf9ef796acb2b6ef
+SHA512 (fastx_toolkit-0.0.14.6-ea0ca83ba24dce80c20ca589b838a281fe5deb0c.tar.gz) = bb9cc9685a37e0a88b5110ad48856d4160dc1a29e6b76f8cdf78baf12a9cea97c35f711b1aef270bba5d44b42c8e6bcc31ef9eae239de785fe1bd38cd4994d3e
+Size (fastx_toolkit-0.0.14.6-ea0ca83ba24dce80c20ca589b838a281fe5deb0c.tar.gz) = 259875 bytes
+SHA1 (patch-src_fasta__formatter_fasta__formatter.cpp) = 5fc622320186c5415cbcc4ae97cfc24f68983949
 SHA1 (patch-src_libfastx_fastx.h) = 5a387ac575a5269bc03e3f09ab752889efb8870c
diff --git a/gtextutils/Makefile b/gtextutils/Makefile
index 8f681fe5ae..f4411b4fbd 100644
--- a/gtextutils/Makefile
+++ b/gtextutils/Makefile
@@ -4,17 +4,21 @@
 #               Generated by fbsd2pkg                     #
 ###########################################################
 
-DISTNAME=	libgtextutils-0.7
+DISTNAME=	libgtextutils-0.7.2
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=agordon/}
+GITHUB_TAG=	510270ecf2e342a81d5dffbf38505bfe18d23dca
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 COMMENT=	Gordon text utilities
 LICENSE=	gnu-gpl-v3
 
 USE_LANGUAGES=	c c++
-USE_TOOLS+=	pkg-config
+USE_TOOLS+=	automake autoreconf pkg-config
 USE_LIBTOOL=	yes
 GNU_CONFIGURE=	yes
 
+pre-configure:
+	cd ${WRKSRC} && autoreconf -fiv
+
 .include "../../mk/bsd.pkg.mk"
diff --git a/gtextutils/distinfo b/gtextutils/distinfo
index 55aa55c508..2fadff3a78 100644
--- a/gtextutils/distinfo
+++ b/gtextutils/distinfo
@@ -1,6 +1,5 @@
 $NetBSD$
 
-RMD160 (libgtextutils-0.7.tar.gz) = 54c1eb3e4c49d3982cbb4e0b598549ea58776347
-SHA512 (libgtextutils-0.7.tar.gz) = cc6fb48e50f4fc86d92b1c7e7c1a1a31fb83d4914893e432f5b61e11473eec5acf130eab6e543b443b047cab1e9942c255c7a26f7e610ce7a63b08fedddbd9f7
-Size (libgtextutils-0.7.tar.gz) = 358602 bytes
-SHA1 (patch-src_gtextutils_text__line__reader.cpp) = e982e7e29119b813d61f65a2e83258014e4afd38
+BLAKE2s (libgtextutils-0.7.2-510270ecf2e342a81d5dffbf38505bfe18d23dca.tar.gz) = 8b5ce158e5081aae0da7349d90af8d2fb21087ea16c2c2af0a0470be714a9069
+SHA512 (libgtextutils-0.7.2-510270ecf2e342a81d5dffbf38505bfe18d23dca.tar.gz) = 5395ff3a3bd5e5f2baa7213e0df15b34ec13477491fd74fd0029b294c6760ed3ecd91363c4553addf67aba5e694a38dc7ea8664c4731b286b53c240716497f18
+Size (libgtextutils-0.7.2-510270ecf2e342a81d5dffbf38505bfe18d23dca.tar.gz) = 32601 bytes
diff --git a/gtextutils/patches/patch-src_gtextutils_text__line__reader.cpp b/gtextutils/patches/patch-src_gtextutils_text__line__reader.cpp
deleted file mode 100644
index 7728af525e..0000000000
--- a/gtextutils/patches/patch-src_gtextutils_text__line__reader.cpp
+++ /dev/null
@@ -1,15 +0,0 @@
-$NetBSD$
-
-# Modern C++ compilers don't implicitly convert istream to bool
-
---- src/gtextutils/text_line_reader.cpp.orig	2014-01-05 14:09:32.000000000 -0600
-+++ src/gtextutils/text_line_reader.cpp	2019-01-07 19:39:57.233565835 -0600
-@@ -44,6 +44,7 @@ bool TextLineReader::next_line()
- 	if (input_stream.eof())
- 		return false;
- 
--	return input_stream ;
-+        // Fix based on the only code change since 0.7
-+	return input_stream.good() ;
- }
-