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biolibc: Update to 0.1.3.92
Module Name: pkgsrc-wip
Committed By: Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Wed Aug 25 08:22:02 2021 -0500
Changeset: 1aa8342dd81cb20c513d33d3434469a3eb027c6a
Modified Files:
biolibc/Makefile
biolibc/PLIST
biolibc/buildlink3.mk
biolibc/distinfo
Log Message:
biolibc: Update to 0.1.3.92
Complete basic fastx class testing for apps that can be used on either
FASTA or FASTQ streams
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=1aa8342dd81cb20c513d33d3434469a3eb027c6a
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
biolibc/Makefile | 4 ++--
biolibc/PLIST | 13 +++++++++++++
biolibc/buildlink3.mk | 2 +-
biolibc/distinfo | 8 ++++----
4 files changed, 20 insertions(+), 7 deletions(-)
diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index 1e8d947a06..245260fe21 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
# $NetBSD$
-DISTNAME= biolibc-0.1.3.88
+DISTNAME= biolibc-0.1.3.92
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG= 919cd171c91bf8f34a2b967bc471b7de532b59f5
+GITHUB_TAG= 11d8c12fdfe633227acd8ff31d8386dced19b4be
MAINTAINER= bacon%NetBSD.org@localhost
HOMEPAGE= https://github.com/auerlab/biolibc
diff --git a/biolibc/PLIST b/biolibc/PLIST
index 6895ef4bf2..8620330f6f 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -4,6 +4,7 @@ include/biolibc/biolibc.h
include/biolibc/biostring.h
include/biolibc/fasta.h
include/biolibc/fastq.h
+include/biolibc/fastx.h
include/biolibc/gff.h
include/biolibc/overlap.h
include/biolibc/pos-list.h
@@ -399,6 +400,18 @@ man/man3/bl_fastq_set_seq_array_size.3
man/man3/bl_fastq_set_seq_cpy.3
man/man3/bl_fastq_set_seq_len.3
man/man3/bl_fastq_write.3
+man/man3/bl_fastx_desc.3
+man/man3/bl_fastx_desc_len.3
+man/man3/bl_fastx_free.3
+man/man3/bl_fastx_init.3
+man/man3/bl_fastx_plus.3
+man/man3/bl_fastx_plus_len.3
+man/man3/bl_fastx_qual.3
+man/man3/bl_fastx_qual_len.3
+man/man3/bl_fastx_read.3
+man/man3/bl_fastx_seq.3
+man/man3/bl_fastx_seq_len.3
+man/man3/bl_fastx_write.3
man/man3/bl_gff_read.3
man/man3/bl_gff_set_attributes.3
man/man3/bl_gff_set_attributes_ae.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index 896b5f8964..e12385d2e1 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+= biolibc
.if !defined(BIOLIBC_BUILDLINK3_MK)
BIOLIBC_BUILDLINK3_MK:=
-BUILDLINK_API_DEPENDS.biolibc+= biolibc>=0.1.3.87
+BUILDLINK_API_DEPENDS.biolibc+= biolibc>=0.1.3.92
BUILDLINK_PKGSRCDIR.biolibc?= ../../wip/biolibc
.endif # BIOLIBC_BUILDLINK3_MK
diff --git a/biolibc/distinfo b/biolibc/distinfo
index 585b11f8df..0e2c542f1a 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,6 +1,6 @@
$NetBSD$
-SHA1 (biolibc-0.1.3.88-919cd171c91bf8f34a2b967bc471b7de532b59f5.tar.gz) = 4c9530ba1b1ee2d78cecc5685cd9fc103080d888
-RMD160 (biolibc-0.1.3.88-919cd171c91bf8f34a2b967bc471b7de532b59f5.tar.gz) = 32aec1c035244a8ef0482ccb96142f104d13f99c
-SHA512 (biolibc-0.1.3.88-919cd171c91bf8f34a2b967bc471b7de532b59f5.tar.gz) = e334354ee852f864b5126258d2e7861e3a3031235b3e4a7196dc2257c2cb3f2effa0f78a39a540ec0eda1c9a174360bcb9aba0e2d30ccf1d93b7642cf2823aa5
-Size (biolibc-0.1.3.88-919cd171c91bf8f34a2b967bc471b7de532b59f5.tar.gz) = 113724 bytes
+SHA1 (biolibc-0.1.3.92-11d8c12fdfe633227acd8ff31d8386dced19b4be.tar.gz) = b43c71cc6790913f28127def9ef6affa893418b2
+RMD160 (biolibc-0.1.3.92-11d8c12fdfe633227acd8ff31d8386dced19b4be.tar.gz) = 495d27ef2a7542b876b32e3878717f81125b6bac
+SHA512 (biolibc-0.1.3.92-11d8c12fdfe633227acd8ff31d8386dced19b4be.tar.gz) = 20b5d0cb06909504f6baa48af27aa87d955137ec0534a8af6a33ac18df0c8fea1f56e103d81e2f765310248757c12308d6f68aa70422778d9a3f5387c9d6facb
+Size (biolibc-0.1.3.92-11d8c12fdfe633227acd8ff31d8386dced19b4be.tar.gz) = 117429 bytes
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