biolibc-tools: High-performance bioinformatics tools based on biolibc

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Mon Aug 16 17:46:31 2021 -0500
Changeset:	55a2e88c2026070ee18375a66ce0013ded044327

Modified Files:
	Makefile
Added Files:
	biolibc-tools/DESCR
	biolibc-tools/Makefile
	biolibc-tools/PLIST
	biolibc-tools/distinfo

Log Message:
biolibc-tools: High-performance bioinformatics tools based on biolibc

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=55a2e88c2026070ee18375a66ce0013ded044327

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 Makefile               |  1 +
 biolibc-tools/DESCR    |  4 ++++
 biolibc-tools/Makefile | 25 +++++++++++++++++++++++++
 biolibc-tools/PLIST    |  6 ++++++
 biolibc-tools/distinfo |  6 ++++++
 5 files changed, 42 insertions(+)

diffs:
diff --git a/Makefile b/Makefile
index 90f4e4d770..3822e36d8d 100644
--- a/Makefile
+++ b/Makefile
@@ -274,6 +274,7 @@ SUBDIR+=	bijiben
 SUBDIR+=	bindgraph
 SUBDIR+=	binutils-gold-git
 SUBDIR+=	biolibc
+SUBDIR+=	biolibc-tools
 SUBDIR+=	biopython
 SUBDIR+=	bioruby
 SUBDIR+=	bip
diff --git a/biolibc-tools/DESCR b/biolibc-tools/DESCR
new file mode 100644
index 0000000000..4eaefc55cd
--- /dev/null
+++ b/biolibc-tools/DESCR
@@ -0,0 +1,4 @@
+Biolibc-tools is a collection of simple fast, memory-efficient,
+programs for processing biological data.  These are simple programs
+built on biolibc that are not complex enough to warrant a separate
+project.
diff --git a/biolibc-tools/Makefile b/biolibc-tools/Makefile
new file mode 100644
index 0000000000..3c71913411
--- /dev/null
+++ b/biolibc-tools/Makefile
@@ -0,0 +1,25 @@
+# $NetBSD$
+#
+###########################################################
+#                  Generated by fbsd2pkg                  #
+#              Mon Aug 16 17:37:49 CDT 2021               #
+###########################################################
+
+DISTNAME=	biolibc-tools-0.1.0.4
+CATEGORIES=	biology
+MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
+GITHUB_TAG=	a59e9fff53c10c722767df09de4421e25e1f3e75
+
+MAINTAINER=	bacon%NetBSD.org@localhost
+HOMEPAGE=	https://github.com/auerlab/biolibc-tools
+COMMENT=	High-performance bioinformatics tools based on biolibc
+LICENSE=	2-clause-bsd
+
+INSTALL_TARGET=	install-strip
+
+pre-build:
+	(cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend)
+
+.include "../../wip/biolibc/buildlink3.mk"
+.include "../../wip/libxtend/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/biolibc-tools/PLIST b/biolibc-tools/PLIST
new file mode 100644
index 0000000000..af64ca1da6
--- /dev/null
+++ b/biolibc-tools/PLIST
@@ -0,0 +1,6 @@
+@comment $NetBSD$
+bin/fastq-dedup
+bin/fastq2tsv
+libexec/biolibc-tools/uniq-seqs.awk
+man/man1/fastq-dedup.1
+man/man1/fastq2tsv.1
diff --git a/biolibc-tools/distinfo b/biolibc-tools/distinfo
new file mode 100644
index 0000000000..7deeaca7fb
--- /dev/null
+++ b/biolibc-tools/distinfo
@@ -0,0 +1,6 @@
+$NetBSD$
+
+SHA1 (biolibc-tools-0.1.0.4-a59e9fff53c10c722767df09de4421e25e1f3e75.tar.gz) = 95c802ea6ed34ed0de2135802075948af02ab97c
+RMD160 (biolibc-tools-0.1.0.4-a59e9fff53c10c722767df09de4421e25e1f3e75.tar.gz) = 07fedf7386d1f651eedb520e8dbcbcf1ebf5cac6
+SHA512 (biolibc-tools-0.1.0.4-a59e9fff53c10c722767df09de4421e25e1f3e75.tar.gz) = d16dc987f31ee4bb217f32f65a36b108742f72492c33d78d30bade041a447d4d76f1eaeef884fb0f75fa4392297ea1693481a5fb099e5d94b4953650bbc29b22
+Size (biolibc-tools-0.1.0.4-a59e9fff53c10c722767df09de4421e25e1f3e75.tar.gz) = 8902 bytes