pkgsrc-WIP-changes by thread

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• wip/nanoQC: import nanoQC version 0.9.4.20200617 a, Brook Milligan
• wip/nanolyse: import nanolyse version 1.2.0.202009, Brook Milligan
• py-pipdeptree: fixed CATEGORIES and DESCR, Aleksej Lebedev
• py-pipdeptree: imported version 2.0.0, Aleksej Lebedev
• wm/shod: update to 0.5.0, pin
• wip/nanofilt: import nanofilt version 2.8.0.202102, Brook Milligan
• wip/nanostat: import nanostat version 1.5.0.202101, Brook Milligan
• wip/nanoget: import nanoget version 1.16.1.2021032, Brook Milligan
• wip/nanomath: import nanomath version 1.2.1.202106, Brook Milligan
• wip/py-joypy: import joypy version 0.2.5., Brook Milligan
• wip/py-pysam: fix @rpath handling on Darwin, Brook Milligan
• wip/py-pysam: update to version 0.16.0.1, Brook Milligan
• wip/py-pysam: use pkgsrc htslib, Brook Milligan
• twintk: Update to 0.9.4.10, Jason Bacon
• rust: apply patch to install.sh from the lang/rust, Havard Eidnes
• cfssl: Update to 1.6.0, Iku Iwasa
• task: Update to 3.4.3, Iku Iwasa
• consul: Update to 1.9.6, Iku Iwasa
• iosevka-*: Update to 7.0.3, Iku Iwasa
• py-identify: Update to 2.2.9, Iku Iwasa
• ags: update to ags-3.5.1.7, Yorick Hardy
• commandergenius: update to Commander-Genius-2.8.1, Yorick Hardy
• inkscape: add wip update to 1.1, Thomas Klausner
• necat: import necat version 0.0.1_update20200803 a, Brook Milligan
• wezterm: go a little further with porting., Benny Siegert
• rusty-rain: update to 0.3.4, pin
• mutter-linux: Update to 40.1, Dan Cîrnaț
• gnome-desktop: USE_TOOLS+= gdbus-codegen, Dan Cîrnaț
• mackerel-agent-plugin: update to v0.64.1, Susumu Miwa
• lua-lualdap: import version 1.2.6, Pierre Pronchery
• Upgrade routinator to version 0.9.0., Havard Eidnes
• mutter: Update wip/mutter to 40.1, Dan CÃirnat
• gnome-shell: USE_TOOLS+= gdbus-codegen, Dan CÃirnat
• Update md4c to version 0.4.8, Niclas Rosenvik
• initware: fix cmake patch, Dan CÃirnat
• (ham/wsjt) remove old name version (my mistake), Makoto Fujiwara (CF-SX3)
• (ham/wsjtx) Add missing single quotes around CMAKE, Makoto Fujiwara (CF-SX3)
• initware: Fix build, PLIST, DESCR, Dan CÃirnat
• ldc: disable build with lld, Dan Cîrnaț
• Upgrade routinator to version 0.9.0-rc3., Havard Eidnes
• vcf2hap: Update to 0.1.2.5, Jason Bacon
• vcf-split: Update to 0.1.1.7, Jason Bacon
• ad2vcf: Update to 0.1.2.9, Jason Bacon
• biolibc: Update to 0.1.2.12, Jason Bacon