biolibc: Update to 0.1.2.8

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Tue May 25 09:48:08 2021 -0500
Changeset:	78e6f6bf69f308127a8e5c26b8c24da94c42f23c

Modified Files:
	biolibc/Makefile
	biolibc/PLIST
	biolibc/buildlink3.mk
	biolibc/distinfo

Log Message:
biolibc: Update to 0.1.2.8

Finish BED mutator functions, generate man pages, fix BED_INIT

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=78e6f6bf69f308127a8e5c26b8c24da94c42f23c

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 biolibc/Makefile      | 6 +++---
 biolibc/PLIST         | 9 +++++++++
 biolibc/buildlink3.mk | 2 +-
 biolibc/distinfo      | 8 ++++----
 4 files changed, 17 insertions(+), 8 deletions(-)

diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index 5d8c50c28b..27ee59130e 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
 # $NetBSD$
 
-DISTNAME=	biolibc-0.1.2.6
+DISTNAME=	biolibc-0.1.2.8
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=	bb8ab533e9a78a07a73b064a1a90c119d319988e
+GITHUB_TAG=	05355ded213ebb2af149e275b614d084f5bb47f1
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 HOMEPAGE=	https://github.com/auerlab/biolibc
@@ -15,7 +15,7 @@ INSTALL_TARGET=	install-strip
 .include "../../mk/bsd.prefs.mk"
 
 .if ${OPSYS} == Darwin
-# For $(shell realpath ...).  != doesn't work in Apple's make.
+# For $(shell realpath ...).  != doesn't work in Apple's gmake.
 USE_TOOLS=	gmake
 BUILD_DEPENDS=	realpath>0:../../wip/realpath
 BUILD_TARGET=	apple
diff --git a/biolibc/PLIST b/biolibc/PLIST
index 5f004fd3f9..0f23217100 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -14,7 +14,16 @@ lib/libbiolibc.so.1.0
 man/man3/bed_check_order.3
 man/man3/bed_gff_cmp.3
 man/man3/bed_read_feature.3
+man/man3/bed_set_chromosome.3
+man/man3/bed_set_end_pos.3
 man/man3/bed_set_fields.3
+man/man3/bed_set_name.3
+man/man3/bed_set_rgb_str.3
+man/man3/bed_set_score.3
+man/man3/bed_set_start_pos.3
+man/man3/bed_set_strand.3
+man/man3/bed_set_thick_end_pos.3
+man/man3/bed_set_thick_start_pos.3
 man/man3/bed_skip_header.3
 man/man3/bed_write_feature.3
 man/man3/biolibc.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index 75238b2f43..0da14276a8 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+=	biolibc
 .if !defined(BIOLIBC_BUILDLINK3_MK)
 BIOLIBC_BUILDLINK3_MK:=
 
-BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.1.2.6
+BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.1.2.8
 BUILDLINK_PKGSRCDIR.biolibc?=	../../wip/biolibc
 .endif	# BIOLIBC_BUILDLINK3_MK
 
diff --git a/biolibc/distinfo b/biolibc/distinfo
index f307e3c9b1..67d7c9d09a 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,6 +1,6 @@
 $NetBSD$
 
-SHA1 (biolibc-0.1.2.6-bb8ab533e9a78a07a73b064a1a90c119d319988e.tar.gz) = 40ddb715e3ddda3513020ab0f6fa904e617b6790
-RMD160 (biolibc-0.1.2.6-bb8ab533e9a78a07a73b064a1a90c119d319988e.tar.gz) = e6341c430c4c16efcabc6c5eb06fbe335309533e
-SHA512 (biolibc-0.1.2.6-bb8ab533e9a78a07a73b064a1a90c119d319988e.tar.gz) = 6a8975675baec72e0cb1da5973094172e792fd20f341b03d6c5b788b0fc35051dfafbdc675c651360ebc98775a5d3999077e66d7375cdabe3b6c67249ad7da6b
-Size (biolibc-0.1.2.6-bb8ab533e9a78a07a73b064a1a90c119d319988e.tar.gz) = 23171 bytes
+SHA1 (biolibc-0.1.2.8-05355ded213ebb2af149e275b614d084f5bb47f1.tar.gz) = f937c6cdca5146cffa20d35312bdcceb47f1f702
+RMD160 (biolibc-0.1.2.8-05355ded213ebb2af149e275b614d084f5bb47f1.tar.gz) = 73bbabc373906ba62680e371c2fc84fae8485a15
+SHA512 (biolibc-0.1.2.8-05355ded213ebb2af149e275b614d084f5bb47f1.tar.gz) = 6ba42b6e1df5e049adcdcc51c3bfccd8029ee5ae8dde66e2e0287489aa4d668c8981951f441e80f9695c4a436d5a72625ab51f4d3d5a73f023e2a30d15d3f9cd
+Size (biolibc-0.1.2.8-05355ded213ebb2af149e275b614d084f5bb47f1.tar.gz) = 25033 bytes