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py-cutadapt, py-dropbox: removed, already in base
Module Name: pkgsrc-wip
Committed By: Adam Ciarciński <aciarcinski%teonite.com@localhost>
Pushed By: adam
Date: Fri Apr 9 08:15:16 2021 +0200
Changeset: 7120ecbb23a200552d8b1d7fadf19666419d1cf2
Modified Files:
Makefile
p5-trimgalore/Makefile
Removed Files:
py-cutadapt/DESCR
py-cutadapt/Makefile
py-cutadapt/PLIST
py-cutadapt/distinfo
py-dropbox/DESCR
py-dropbox/Makefile
py-dropbox/PLIST
Log Message:
py-cutadapt, py-dropbox: removed, already in base
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=7120ecbb23a200552d8b1d7fadf19666419d1cf2
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
Makefile | 2 --
p5-trimgalore/Makefile | 2 +-
py-cutadapt/DESCR | 2 --
py-cutadapt/Makefile | 19 -------------------
py-cutadapt/PLIST | 49 -------------------------------------------------
py-cutadapt/distinfo | 6 ------
py-dropbox/DESCR | 2 --
py-dropbox/Makefile | 17 -----------------
py-dropbox/PLIST | 48 ------------------------------------------------
9 files changed, 1 insertion(+), 146 deletions(-)
diffs:
diff --git a/Makefile b/Makefile
index 2ee50bae52..5b753383f9 100644
--- a/Makefile
+++ b/Makefile
@@ -3523,7 +3523,6 @@ SUBDIR+= py-ct
SUBDIR+= py-ctutils
SUBDIR+= py-cubicweb
SUBDIR+= py-curlify
-SUBDIR+= py-cutadapt
SUBDIR+= py-cva
SUBDIR+= py-cvf
SUBDIR+= py-cvss
@@ -3637,7 +3636,6 @@ SUBDIR+= py-dpkt-fix
SUBDIR+= py-drawille
SUBDIR+= py-drawnow
SUBDIR+= py-dreampie
-SUBDIR+= py-dropbox
SUBDIR+= py-dsltools
SUBDIR+= py-duali
SUBDIR+= py-dubins
diff --git a/p5-trimgalore/Makefile b/p5-trimgalore/Makefile
index f16a23d5d4..f9ee6ff525 100644
--- a/p5-trimgalore/Makefile
+++ b/p5-trimgalore/Makefile
@@ -34,6 +34,6 @@ do-install:
${INSTALL_SCRIPT} ${WRKSRC}/trim_galore ${DESTDIR}${PREFIX}/bin
cd ${WRKSRC} && pax -rw test_files ${DESTDIR}${DATADIR}
-.include "../../wip/py-cutadapt/buildlink3.mk"
+.include "../../biology/py-cutadapt/buildlink3.mk"
.include "../../lang/python/application.mk"
.include "../../mk/bsd.pkg.mk"
diff --git a/py-cutadapt/DESCR b/py-cutadapt/DESCR
deleted file mode 100644
index 0adbe298ed..0000000000
--- a/py-cutadapt/DESCR
+++ /dev/null
@@ -1,2 +0,0 @@
-Cutadapt finds and removes adapter sequences, primers, poly-A tails and other
-types of unwanted sequence from your high-throughput sequencing reads.
diff --git a/py-cutadapt/Makefile b/py-cutadapt/Makefile
deleted file mode 100644
index 109cd825b3..0000000000
--- a/py-cutadapt/Makefile
+++ /dev/null
@@ -1,19 +0,0 @@
-# $NetBSD$
-
-DISTNAME= cutadapt-3.2
-PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
-CATEGORIES= biology
-MASTER_SITES= ${MASTER_SITE_PYPI:=c/cutadapt/}
-
-MAINTAINER= bacon%NetBSD.org@localhost
-HOMEPAGE= https://cutadapt.readthedocs.io/en/stable/
-COMMENT= Find and remove adapter sequences, primers, poly-A tails, etc
-LICENSE= mit
-
-DEPENDS+= ${PYPKGPREFIX}-xopen>=1.0.0:../../devel/py-xopen
-DEPENDS+= ${PYPKGPREFIX}-dnaio>=0.5.0:../../wip/py-dnaio
-
-PYTHON_SELF_CONFLICT= yes
-
-.include "../../lang/python/egg.mk"
-.include "../../mk/bsd.pkg.mk"
diff --git a/py-cutadapt/PLIST b/py-cutadapt/PLIST
deleted file mode 100644
index e58188d61d..0000000000
--- a/py-cutadapt/PLIST
+++ /dev/null
@@ -1,49 +0,0 @@
-@comment $NetBSD$
-bin/cutadapt
-${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
-${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
-${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
-${PYSITELIB}/${EGG_INFODIR}/entry_points.txt
-${PYSITELIB}/${EGG_INFODIR}/requires.txt
-${PYSITELIB}/${EGG_INFODIR}/top_level.txt
-${PYSITELIB}/cutadapt/__init__.py
-${PYSITELIB}/cutadapt/__init__.pyc
-${PYSITELIB}/cutadapt/__init__.pyo
-${PYSITELIB}/cutadapt/__main__.py
-${PYSITELIB}/cutadapt/__main__.pyc
-${PYSITELIB}/cutadapt/__main__.pyo
-${PYSITELIB}/cutadapt/_align.so
-${PYSITELIB}/cutadapt/_version.py
-${PYSITELIB}/cutadapt/_version.pyc
-${PYSITELIB}/cutadapt/_version.pyo
-${PYSITELIB}/cutadapt/adapters.py
-${PYSITELIB}/cutadapt/adapters.pyc
-${PYSITELIB}/cutadapt/adapters.pyo
-${PYSITELIB}/cutadapt/align.py
-${PYSITELIB}/cutadapt/align.pyc
-${PYSITELIB}/cutadapt/align.pyo
-${PYSITELIB}/cutadapt/filters.py
-${PYSITELIB}/cutadapt/filters.pyc
-${PYSITELIB}/cutadapt/filters.pyo
-${PYSITELIB}/cutadapt/log.py
-${PYSITELIB}/cutadapt/log.pyc
-${PYSITELIB}/cutadapt/log.pyo
-${PYSITELIB}/cutadapt/modifiers.py
-${PYSITELIB}/cutadapt/modifiers.pyc
-${PYSITELIB}/cutadapt/modifiers.pyo
-${PYSITELIB}/cutadapt/parser.py
-${PYSITELIB}/cutadapt/parser.pyc
-${PYSITELIB}/cutadapt/parser.pyo
-${PYSITELIB}/cutadapt/pipeline.py
-${PYSITELIB}/cutadapt/pipeline.pyc
-${PYSITELIB}/cutadapt/pipeline.pyo
-${PYSITELIB}/cutadapt/qualtrim.so
-${PYSITELIB}/cutadapt/report.py
-${PYSITELIB}/cutadapt/report.pyc
-${PYSITELIB}/cutadapt/report.pyo
-${PYSITELIB}/cutadapt/tokenizer.py
-${PYSITELIB}/cutadapt/tokenizer.pyc
-${PYSITELIB}/cutadapt/tokenizer.pyo
-${PYSITELIB}/cutadapt/utils.py
-${PYSITELIB}/cutadapt/utils.pyc
-${PYSITELIB}/cutadapt/utils.pyo
diff --git a/py-cutadapt/distinfo b/py-cutadapt/distinfo
deleted file mode 100644
index 86b4cfb88f..0000000000
--- a/py-cutadapt/distinfo
+++ /dev/null
@@ -1,6 +0,0 @@
-$NetBSD$
-
-SHA1 (cutadapt-3.2.tar.gz) = 11b2545862c4e9a655a279f951b15558b1617506
-RMD160 (cutadapt-3.2.tar.gz) = e04f8be21e118c760dc03d80544c1d4f7135f985
-SHA512 (cutadapt-3.2.tar.gz) = 97ab1cadc3bd1585012c0aba916b0031d8b13bff1f1894f4548b6f7bfa20b5f2d598c499664d755a81be57e36fd5c712f36df77cfcd1f2b28a4f27990ee0b56c
-Size (cutadapt-3.2.tar.gz) = 292702 bytes
diff --git a/py-dropbox/DESCR b/py-dropbox/DESCR
deleted file mode 100644
index b085130761..0000000000
--- a/py-dropbox/DESCR
+++ /dev/null
@@ -1,2 +0,0 @@
-A Python SDK for integrating with the Dropbox API v2. Compatible
-with Python 2.7 and 3.4+.
diff --git a/py-dropbox/Makefile b/py-dropbox/Makefile
deleted file mode 100644
index 52e3515622..0000000000
--- a/py-dropbox/Makefile
+++ /dev/null
@@ -1,17 +0,0 @@
-# $NetBSD$
-
-DISTNAME= dropbox-3.38
-PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
-CATEGORIES= net
-GIT_REPO= git://github.com/dropbox/dropbox-sdk-python.git
-
-MAINTAINER= pkgsrc-users%NetBSD.org@localhost
-HOMEPAGE= https://github.com/dropbox/dropbox-sdk-python
-COMMENT= Python SDK for the Dropbox API v2
-LICENSE= mit
-
-DEPENDS+= ${PYPKGPREFIX}-urllib3-[0-9]*:../../www/py-urllib3
-
-.include "../../lang/python/egg.mk"
-.include "../../wip/mk/git-package.mk"
-.include "../../mk/bsd.pkg.mk"
diff --git a/py-dropbox/PLIST b/py-dropbox/PLIST
deleted file mode 100644
index 280132c0e6..0000000000
--- a/py-dropbox/PLIST
+++ /dev/null
@@ -1,48 +0,0 @@
-@comment $NetBSD$
-${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
-${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
-${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
-${PYSITELIB}/${EGG_INFODIR}/not-zip-safe
-${PYSITELIB}/${EGG_INFODIR}/pbr.json
-${PYSITELIB}/${EGG_INFODIR}/requires.txt
-${PYSITELIB}/${EGG_INFODIR}/top_level.txt
-${PYSITELIB}/dropbox/__init__.py
-${PYSITELIB}/dropbox/__init__.pyc
-${PYSITELIB}/dropbox/__init__.pyo
-${PYSITELIB}/dropbox/babel_serializers.py
-${PYSITELIB}/dropbox/babel_serializers.pyc
-${PYSITELIB}/dropbox/babel_serializers.pyo
-${PYSITELIB}/dropbox/babel_validators.py
-${PYSITELIB}/dropbox/babel_validators.pyc
-${PYSITELIB}/dropbox/babel_validators.pyo
-${PYSITELIB}/dropbox/base.py
-${PYSITELIB}/dropbox/base.pyc
-${PYSITELIB}/dropbox/base.pyo
-${PYSITELIB}/dropbox/client.py
-${PYSITELIB}/dropbox/client.pyc
-${PYSITELIB}/dropbox/client.pyo
-${PYSITELIB}/dropbox/dropbox.py
-${PYSITELIB}/dropbox/dropbox.pyc
-${PYSITELIB}/dropbox/dropbox.pyo
-${PYSITELIB}/dropbox/exceptions.py
-${PYSITELIB}/dropbox/exceptions.pyc
-${PYSITELIB}/dropbox/exceptions.pyo
-${PYSITELIB}/dropbox/files.py
-${PYSITELIB}/dropbox/files.pyc
-${PYSITELIB}/dropbox/files.pyo
-${PYSITELIB}/dropbox/oauth.py
-${PYSITELIB}/dropbox/oauth.pyc
-${PYSITELIB}/dropbox/oauth.pyo
-${PYSITELIB}/dropbox/rest.py
-${PYSITELIB}/dropbox/rest.pyc
-${PYSITELIB}/dropbox/rest.pyo
-${PYSITELIB}/dropbox/session.py
-${PYSITELIB}/dropbox/session.pyc
-${PYSITELIB}/dropbox/session.pyo
-${PYSITELIB}/dropbox/sharing.py
-${PYSITELIB}/dropbox/sharing.pyc
-${PYSITELIB}/dropbox/sharing.pyo
-${PYSITELIB}/dropbox/trusted-certs.crt
-${PYSITELIB}/dropbox/users.py
-${PYSITELIB}/dropbox/users.pyc
-${PYSITELIB}/dropbox/users.pyo
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