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vcf-split: Improve DESCR
Module Name: pkgsrc-wip
Committed By: Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Sun Mar 21 08:43:57 2021 -0500
Changeset: cb9bbab20954625e69e2edf8e1e7a05dbf619d8b
Modified Files:
vcf-split/DESCR
vcf-split/Makefile
vcf-split/distinfo
Log Message:
vcf-split: Improve DESCR
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=cb9bbab20954625e69e2edf8e1e7a05dbf619d8b
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
vcf-split/DESCR | 7 ++++++-
vcf-split/Makefile | 3 +--
vcf-split/distinfo | 8 ++++----
3 files changed, 11 insertions(+), 7 deletions(-)
diffs:
diff --git a/vcf-split/DESCR b/vcf-split/DESCR
index d6083b188b..37f7d39c7c 100644
--- a/vcf-split/DESCR
+++ b/vcf-split/DESCR
@@ -1 +1,6 @@
-Split a multi-sample VCF into single-sample VCFs
+Vcf-split splits a multi-sample VCF into single-sample VCFs, writing thousands
+of output files simultaneously. Parsing the TOPMed human chromosome 1 BCF
+with bcftools takes two days, so extracting the 137,977 samples one at a time
+or using thousands of parallel readers of the same file is impractical.
+Vcf-split solves this by generating thousands of single-sample outputs during
+a single sweep through the multi-sample input.
diff --git a/vcf-split/Makefile b/vcf-split/Makefile
index f13fa12a8c..a50c635143 100644
--- a/vcf-split/Makefile
+++ b/vcf-split/Makefile
@@ -1,9 +1,8 @@
# $NetBSD$
-DISTNAME= vcf-split-0.1.0.20
+DISTNAME= vcf-split-0.1.1
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG= 25247f8aa4a2459bda3aad819bf57e5ffa889990
MAINTAINER= bacon%NetBSD.org@localhost
HOMEPAGE= https://github.com/auerlab/vcf-split
diff --git a/vcf-split/distinfo b/vcf-split/distinfo
index cb9cece181..cd47a62ddd 100644
--- a/vcf-split/distinfo
+++ b/vcf-split/distinfo
@@ -1,6 +1,6 @@
$NetBSD$
-SHA1 (vcf-split-0.1.0.20-25247f8aa4a2459bda3aad819bf57e5ffa889990.tar.gz) = c77929607992e6935f8d2b5a9f5756033f8043fb
-RMD160 (vcf-split-0.1.0.20-25247f8aa4a2459bda3aad819bf57e5ffa889990.tar.gz) = b7c866b7d8d760ad4a66f661037d21aa626eac6a
-SHA512 (vcf-split-0.1.0.20-25247f8aa4a2459bda3aad819bf57e5ffa889990.tar.gz) = 9d8bc67ac837d43a41b74abf2b6985ac3fe75067d4d1c7325579aadefd08c5d86b8adfb558d87e375b22a2533f0b2bf9b434f6dc84e40ec334464298e5f98c9b
-Size (vcf-split-0.1.0.20-25247f8aa4a2459bda3aad819bf57e5ffa889990.tar.gz) = 14230 bytes
+SHA1 (vcf-split-0.1.1.tar.gz) = 550fefb4c07d4632405e94127a19e98031ac0067
+RMD160 (vcf-split-0.1.1.tar.gz) = 76a1b0b5a8934949d39e69ebe719c8f0ba247a13
+SHA512 (vcf-split-0.1.1.tar.gz) = fcc67d287adb9b1f12fb316981ca0b0c06099d8de07113760d198fbcbafb2557ae0d1c202976fae98d6d712a7b802728979d8224354fbaaf65a7872a27d1aa00
+Size (vcf-split-0.1.1.tar.gz) = 14226 bytes
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