linux-gcta: Tool for Genome-wide Complex Trait Analysis

[Jason W Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason W Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Fri Jan 29 08:58:30 2021 -0600
Changeset:	b0b2a8644c2423267c08d768390d9037af10aeae

Modified Files:
	Makefile
Added Files:
	linux-gcta/DESCR
	linux-gcta/Makefile
	linux-gcta/PLIST
	linux-gcta/distinfo

Log Message:
linux-gcta: Tool for Genome-wide Complex Trait Analysis

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=b0b2a8644c2423267c08d768390d9037af10aeae

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 Makefile            |  1 +
 linux-gcta/DESCR    |  5 +++++
 linux-gcta/Makefile | 32 ++++++++++++++++++++++++++++++++
 linux-gcta/PLIST    |  6 ++++++
 linux-gcta/distinfo |  6 ++++++
 5 files changed, 50 insertions(+)

diffs:
diff --git a/Makefile b/Makefile
index 5f35c8fada..4088450935 100644
--- a/Makefile
+++ b/Makefile
@@ -2164,6 +2164,7 @@ SUBDIR+=	linux-acl
 SUBDIR+=	linux-attr
 SUBDIR+=	linux-ch
 SUBDIR+=	linux-chprofessional
+SUBDIR+=	linux-gcta
 SUBDIR+=	linux-hotplug
 SUBDIR+=	linux-kbd
 SUBDIR+=	linux-kernel
diff --git a/linux-gcta/DESCR b/linux-gcta/DESCR
new file mode 100644
index 0000000000..6c177f5eb3
--- /dev/null
+++ b/linux-gcta/DESCR
@@ -0,0 +1,5 @@
+GCTA (Genome-wide Complex Trait Analysis) was originally designed to estimate
+the proportion of phenotypic variance explained by genome- or chromosome-wide
+SNPs for complex traits (the GREML method), and has subsequently extended for
+many other analyses to better understand the genetic architecture of complex
+traits.
diff --git a/linux-gcta/Makefile b/linux-gcta/Makefile
new file mode 100644
index 0000000000..5e549765e3
--- /dev/null
+++ b/linux-gcta/Makefile
@@ -0,0 +1,32 @@
+# $NetBSD$
+#
+###########################################################
+#                  Generated by fbsd2pkg                  #
+#              Tue Mar 14 11:21:21 CDT 2017               #
+###########################################################
+
+DISTNAME=	gcta_${PORTVERSION}beta
+PKGNAME=	linux-gcta-${PORTVERSION}
+CATEGORIES=	biology
+MASTER_SITES=	https://cnsgenomics.com/software/gcta/bin/
+EXTRACT_SUFX=	.zip
+
+MAINTAINER=	bacon%NetBSD.org@localhost
+HOMEPAGE=	http://cnsgenomics.com/software/gcta/index.html
+COMMENT=	Tool for Genome-wide Complex Trait Analysis
+LICENSE=	mit
+
+NO_BUILD=	yes
+
+USE_TOOLS=	unzip
+
+PORTVERSION=	1.93.1
+DATADIR=	${PREFIX}/share/gcta
+
+INSTALLATION_DIRS=	bin ${DATADIR}
+
+do-install:
+	${INSTALL_SCRIPT} ${WRKSRC}/gcta64 ${DESTDIR}${PREFIX}/bin
+	${INSTALL_DATA} ${WRKSRC}/test.* ${DESTDIR}${DATADIR}
+
+.include "../../mk/bsd.pkg.mk"
diff --git a/linux-gcta/PLIST b/linux-gcta/PLIST
new file mode 100644
index 0000000000..b1cfb6b91c
--- /dev/null
+++ b/linux-gcta/PLIST
@@ -0,0 +1,6 @@
+@comment $NetBSD$
+bin/gcta64
+share/gcta/test.bed
+share/gcta/test.bim
+share/gcta/test.fam
+share/gcta/test.phen
diff --git a/linux-gcta/distinfo b/linux-gcta/distinfo
new file mode 100644
index 0000000000..9059de68b3
--- /dev/null
+++ b/linux-gcta/distinfo
@@ -0,0 +1,6 @@
+$NetBSD$
+
+SHA1 (gcta_1.93.1beta.zip) = 3ef8a9e51f5b2fd3a0290a8921253d745d7cabc2
+RMD160 (gcta_1.93.1beta.zip) = b7d5ba8fa9d89fa220ee6560056a0357888ceb78
+SHA512 (gcta_1.93.1beta.zip) = 5d38d60805738ce2f78a0743638a7602fdfc22f094b9340ea995fa30dc0553a2970f965342da4aec6aed21451850be645efb2c6be89ab609d2552ef6b8672222
+Size (gcta_1.93.1beta.zip) = 12054916 bytes