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biolibc: Update to latest commit
Module Name: pkgsrc-wip
Committed By: Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Tue Jul 21 11:58:50 2020 +0000
Changeset: 9b532ab86179e10cac3912ab2b427300021808ea
Modified Files:
biolibc/Makefile
biolibc/distinfo
cblas/Makefile
Log Message:
biolibc: Update to latest commit
Fix sam_alignment_read() skipping alternate lines
Tolerate qual_len != seq_len
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=9b532ab86179e10cac3912ab2b427300021808ea
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
biolibc/Makefile | 4 ++--
biolibc/distinfo | 8 ++++----
cblas/Makefile | 3 ++-
3 files changed, 8 insertions(+), 7 deletions(-)
diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index 7147537a5f..8b7972f046 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -5,11 +5,11 @@
# Tue May 19 13:03:08 CDT 2020 #
###########################################################
-DISTNAME= biolibc-0.1.0.19
+DISTNAME= biolibc-0.1.0.25
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/}
GITHUB_PROJECT= biolibc
-GITHUB_TAG= a2a24ab717633c8ac1c37eac799c9b13623c1163
+GITHUB_TAG= 77c41b66f0128ead5dcccf09e6fbb9e1c0733ac4
MAINTAINER= bacon%NetBSD.org@localhost
HOMEPAGE= https://github.com/auerlab/vcfio
diff --git a/biolibc/distinfo b/biolibc/distinfo
index 8bbf88053c..4a4a53bef6 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,6 +1,6 @@
$NetBSD$
-SHA1 (biolibc-0.1.0.19-a2a24ab717633c8ac1c37eac799c9b13623c1163.tar.gz) = 8c89d0268b4cd38c01c928f3f2da880b0cc67e58
-RMD160 (biolibc-0.1.0.19-a2a24ab717633c8ac1c37eac799c9b13623c1163.tar.gz) = dc870837db11d2a1f3cdda631b5eec2508e096b1
-SHA512 (biolibc-0.1.0.19-a2a24ab717633c8ac1c37eac799c9b13623c1163.tar.gz) = 91e261834b6bde7e8177b0595015fdcfade012dc82c54e91b306790fda00d5ea0bfea4562bf49a1da3c3bfd9519fda5331501e8e916001bda548b2fb1b69bba8
-Size (biolibc-0.1.0.19-a2a24ab717633c8ac1c37eac799c9b13623c1163.tar.gz) = 8858 bytes
+SHA1 (biolibc-0.1.0.25-77c41b66f0128ead5dcccf09e6fbb9e1c0733ac4.tar.gz) = 7d70fb5c71c107f728718c649efbf08670555a6e
+RMD160 (biolibc-0.1.0.25-77c41b66f0128ead5dcccf09e6fbb9e1c0733ac4.tar.gz) = b96e89faa1cf18b77cc812f7a3d364f1a63b9aa1
+SHA512 (biolibc-0.1.0.25-77c41b66f0128ead5dcccf09e6fbb9e1c0733ac4.tar.gz) = 26f9e65642f0497feecdeae358108baadff3a749426804e8e15a9dd85d61f05f6938fab626c672df948799ead45222dad77142b24953274df2f8a2e5ad6e1923
+Size (biolibc-0.1.0.25-77c41b66f0128ead5dcccf09e6fbb9e1c0733ac4.tar.gz) = 9804 bytes
diff --git a/cblas/Makefile b/cblas/Makefile
index a2a167879a..fff706a8e5 100644
--- a/cblas/Makefile
+++ b/cblas/Makefile
@@ -7,7 +7,8 @@ LAPACK_COMPONENT_CMAKE_ARGS= \
-DBLAS_LIBRARIES=${BLAS_LIBS:Q} \
-DUSE_OPTIMIZED_LAPACK=ON \
-DLAPACK_LIBRARIES=${LAPACK_LIBS:Q} \
- -DCBLAS=ON -DLAPACKE=OFF
+ -DCBLAS=ON -DLAPACKE=OFF \
+ -DCMAKE_VERBOSE=ON
.include "../../wip/mk/blas.buildlink3.mk"
.include "../../wip/lapack/Makefile.common"
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