wip/ad2vcf: import ad2vcf-0.1.1.11

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Tue May 19 13:15:53 2020 -0500
Changeset:	5ce04436ad6713d8f529db6b4797d811c88514d0

Added Files:
	ad2vcf/DESCR
	ad2vcf/Makefile
	ad2vcf/PLIST
	ad2vcf/distinfo

Log Message:
wip/ad2vcf: import ad2vcf-0.1.1.11

ad2vdf extracts allelic depth info from a SAM stream and adds it to a
corresponding single-sample VCF file.

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=5ce04436ad6713d8f529db6b4797d811c88514d0

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 ad2vcf/DESCR    |  2 ++
 ad2vcf/Makefile | 23 +++++++++++++++++++++++
 ad2vcf/PLIST    |  2 ++
 ad2vcf/distinfo |  6 ++++++
 4 files changed, 33 insertions(+)

diffs:
diff --git a/ad2vcf/DESCR b/ad2vcf/DESCR
new file mode 100644
index 0000000000..3a5387e348
--- /dev/null
+++ b/ad2vcf/DESCR
@@ -0,0 +1,2 @@
+ad2vdf extracts allelic depth info from a SAM stream and adds it to a
+corresponding single-sample VCF file.
diff --git a/ad2vcf/Makefile b/ad2vcf/Makefile
new file mode 100644
index 0000000000..4e8a03a76d
--- /dev/null
+++ b/ad2vcf/Makefile
@@ -0,0 +1,23 @@
+# $NetBSD$
+#
+###########################################################
+#                  Generated by fbsd2pkg                  #
+#              Tue May 19 13:12:28 CDT 2020               #
+###########################################################
+
+DISTNAME=	ad2vcf-0.1.1.11
+CATEGORIES=	biology
+MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
+GITHUB_PROJECT=	ad2vcf
+GITHUB_TAG=	1dd540c1d20eacfccc57d7b240d5274931b17c78
+
+MAINTAINER=	bacon%NetBSD.org@localhost
+HOMEPAGE=	https://github.com/auerlab/ad2vcf
+COMMENT=	Add allelic depth info from a SAM stream to a VCF file
+LICENSE=	2-clause-bsd
+
+pre-build:
+	(cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend)
+
+.include "../../wip/biolibc/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/ad2vcf/PLIST b/ad2vcf/PLIST
new file mode 100644
index 0000000000..2dc4bf1e15
--- /dev/null
+++ b/ad2vcf/PLIST
@@ -0,0 +1,2 @@
+@comment $NetBSD$
+bin/ad2vcf
diff --git a/ad2vcf/distinfo b/ad2vcf/distinfo
new file mode 100644
index 0000000000..baf4b277cf
--- /dev/null
+++ b/ad2vcf/distinfo
@@ -0,0 +1,6 @@
+$NetBSD$
+
+SHA1 (ad2vcf-0.1.1.11-1dd540c1d20eacfccc57d7b240d5274931b17c78.tar.gz) = eb2ec815d9baf9ff1359a7ed7cc4d4d8e6f2c731
+RMD160 (ad2vcf-0.1.1.11-1dd540c1d20eacfccc57d7b240d5274931b17c78.tar.gz) = 7da9a410c221ba598ebf3bb05b56903b7a196eb0
+SHA512 (ad2vcf-0.1.1.11-1dd540c1d20eacfccc57d7b240d5274931b17c78.tar.gz) = ccee291fa8f2ba0db5b80211590e08aacb0cfedbb18de9218415bd4851bdfdc7540f144dea832ac273b68922b82680452e9ea5eec60b5f903b0c31fdf96bdaaf
+Size (ad2vcf-0.1.1.11-1dd540c1d20eacfccc57d7b240d5274931b17c78.tar.gz) = 54346 bytes