ngs-sdk-all: remove

To: pkgsrc-wip-changes%NetBSD.org@localhost
Subject: ngs-sdk-all: remove
From: Benny Siegert <bsiegert%gmail.com@localhost>
Date: Fri, 14 Dec 2018 16:30:56 +0000
Module Name:	pkgsrc-wip
Committed By:	Benny Siegert <bsiegert%gmail.com@localhost>
Pushed By:	bsiegert
Date:		Fri Dec 14 17:30:56 2018 +0100
Changeset:	7d05e5da9a1f73fa88ab6412d161d8803a1068be

Removed Files:
	ngs-sdk-all/DESCR
	ngs-sdk-all/Makefile
	ngs-sdk-all/PLIST
	ngs-sdk-all/distinfo
	ngs-sdk-all/patches/patch-ngs-bam_setup_konfigure.perl
	ngs-sdk-all/patches/patch-ngs-java_setup_konfigure.perl
	ngs-sdk-all/patches/patch-ngs-python_setup_konfigure.perl
	ngs-sdk-all/patches/patch-ngs-sdk_setup_konfigure.perl

Log Message:
ngs-sdk-all: remove

This is missing description, PLIST, license and basically anything
else. It has been that way since 2017.

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=7d05e5da9a1f73fa88ab6412d161d8803a1068be

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 ngs-sdk-all/DESCR                                  |  0
 ngs-sdk-all/Makefile                               | 33 ----------------
 ngs-sdk-all/PLIST                                  |  1 -
 ngs-sdk-all/distinfo                               | 10 -----
 .../patches/patch-ngs-bam_setup_konfigure.perl     | 46 ----------------------
 .../patches/patch-ngs-java_setup_konfigure.perl    | 46 ----------------------
 .../patches/patch-ngs-python_setup_konfigure.perl  | 46 ----------------------
 .../patches/patch-ngs-sdk_setup_konfigure.perl     | 46 ----------------------
 8 files changed, 228 deletions(-)

diffs:
diff --git a/ngs-sdk-all/DESCR b/ngs-sdk-all/DESCR
deleted file mode 100644
index e69de29bb2..0000000000
diff --git a/ngs-sdk-all/Makefile b/ngs-sdk-all/Makefile
deleted file mode 100644
index 215b11456d..0000000000
--- a/ngs-sdk-all/Makefile
+++ /dev/null
@@ -1,33 +0,0 @@
-# $NetBSD$
-
-GITHUB_PROJECT=	ngs
-DISTNAME=	1.2.3
-PKGNAME=	ngs-sdk-all-${DISTNAME}
-CATEGORIES=	biology
-MASTER_SITES=	${MASTER_SITE_GITHUB:=ncbi/}
-DIST_SUBDIR=	${GITHUB_PROJECT}
-
-MAINTAINER=	INSERT_YOUR_MAIL_ADDRESS_HERE
-HOMEPAGE=	${MASTER_SITE_GITHUB:=ncbi/ngs/}
-COMMENT=	TODO: Short description of the package
-#LICENSE=	# TODO: (see mk/license.mk)
-.include "../../biology/ngs-sdk/buildlink3.mk"
-
-#DEPENDS+=	ngs-sdk
-WRKSRC=		${WRKDIR}/${GITHUB_PROJECT}-${DISTNAME}
-HAS_CONFIGURE=	yes
-CONFIGURE_ARGS+=	--prefix=${PREFIX}
-USE_TOOLS+=	gmake perl:build
-USE_LANGUAGES=	c c++
-BUILD_TARGET=	default
-.include "../../mk/java-vm.mk"
-.include "../../mk/bsd.pkg.mk"
-repatch:
-	mkpatches
-	${MAKE} mps
-	${MAKE} clean
-	${MAKE} configure
-
-remake:
-	${MAKE} clean
-	${MAKE} configure
diff --git a/ngs-sdk-all/PLIST b/ngs-sdk-all/PLIST
deleted file mode 100644
index 48d96a5493..0000000000
--- a/ngs-sdk-all/PLIST
+++ /dev/null
@@ -1 +0,0 @@
-@comment $NetBSD$
diff --git a/ngs-sdk-all/distinfo b/ngs-sdk-all/distinfo
deleted file mode 100644
index ad6882bc38..0000000000
--- a/ngs-sdk-all/distinfo
+++ /dev/null
@@ -1,10 +0,0 @@
-$NetBSD$
-
-SHA1 (ngs/1.2.3.tar.gz) = 2972484bf163b3678d73dd455a26ec794d8b4170
-RMD160 (ngs/1.2.3.tar.gz) = f5992f0f2a2aaae391353f645d084bbd9367e766
-SHA512 (ngs/1.2.3.tar.gz) = 24edd00a8ca80aaa2d76c512841d6f462d2b7598f518fe961e2e4d78799044b09e0bc828b8789704fd4301469896fe0abafd4b2f5e0a3bae43bbaef9487b6297
-Size (ngs/1.2.3.tar.gz) = 977970 bytes
-SHA1 (patch-ngs-bam_setup_konfigure.perl) = 3f5025dfb96f31a99eb1d42555bb9a72d66c69fe
-SHA1 (patch-ngs-java_setup_konfigure.perl) = 4fbae9e5ff4ef19f26a958cc847f28d0122870f9
-SHA1 (patch-ngs-python_setup_konfigure.perl) = 719a057797547d7f8ea9bb592991686d6bdaab10
-SHA1 (patch-ngs-sdk_setup_konfigure.perl) = 5d0525df214a4c3caca9dff14e41aeb7fb4fc955
diff --git a/ngs-sdk-all/patches/patch-ngs-bam_setup_konfigure.perl b/ngs-sdk-all/patches/patch-ngs-bam_setup_konfigure.perl
deleted file mode 100644
index 5479a4cd42..0000000000
--- a/ngs-sdk-all/patches/patch-ngs-bam_setup_konfigure.perl
+++ /dev/null
@@ -1,46 +0,0 @@
-$NetBSD$
-
---- ngs-bam/setup/konfigure.perl.orig	2015-11-23 18:38:45.000000000 +0000
-+++ ngs-bam/setup/konfigure.perl
-@@ -198,14 +198,14 @@ print "checking system type... " unless
- my ($OS, $ARCH, $OSTYPE, $MARCH, @ARCHITECTURES) = OsArch();
- println $OSTYPE unless ($AUTORUN);
- 
--unless ($OSTYPE =~ /linux/i || $OSTYPE =~ /darwin/i || $OSTYPE eq 'win') {
-+unless ($OSTYPE =~ /linux/i || $OSTYPE =~ /darwin/i || $OSTYPE eq 'win' || $OSTYPE eq 'NetBSD') {
-     println "configure: error: unsupported system '$OSTYPE'";
-     exit 1;
- }
- 
- print "checking machine architecture... " unless ($AUTORUN);
- println $MARCH unless ($AUTORUN);
--unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) {
-+unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i || $MARCH =~ /amd64/i) {
-     println "configure: error: unsupported architecture '$OSTYPE'";
-     exit 1;
- }
-@@ -300,6 +300,8 @@ if ($MARCH =~ /x86_64/i) {
-     $BITS = '32_64';
- } elsif ($MARCH =~ /i?86/i) {
-     $BITS = 32;
-+} elsif ($MARCH =~ /amd64/i) {
-+    $BITS = 64;
- } else {
-     die "unrecognized Architecture '$ARCH'";
- }
-@@ -329,6 +331,15 @@ if ($OSTYPE =~ /linux/i) {
-     $TOOLS = 'clang' unless ($TOOLS);
- } elsif ($OSTYPE eq 'win') {
-     $TOOLS = 'vc++';
-+} elsif ($OSTYPE =~ /NetBSD/i) {
-+    $LPFX = 'lib';
-+    $OBJX = 'o';
-+    $LOBX = 'pic.o';
-+    $LIBX = 'a';
-+    $SHLX = 'so';
-+    $EXEX = '';
-+    $OSINC = 'unix';
-+    $TOOLS = 'gcc' unless ($TOOLS);
- } else {
-     die "unrecognized OS '$OSTYPE'";
- }
diff --git a/ngs-sdk-all/patches/patch-ngs-java_setup_konfigure.perl b/ngs-sdk-all/patches/patch-ngs-java_setup_konfigure.perl
deleted file mode 100644
index 91b937e043..0000000000
--- a/ngs-sdk-all/patches/patch-ngs-java_setup_konfigure.perl
+++ /dev/null
@@ -1,46 +0,0 @@
-$NetBSD$
-
---- ngs-java/setup/konfigure.perl.orig	2015-11-23 18:38:45.000000000 +0000
-+++ ngs-java/setup/konfigure.perl
-@@ -198,14 +198,14 @@ print "checking system type... " unless
- my ($OS, $ARCH, $OSTYPE, $MARCH, @ARCHITECTURES) = OsArch();
- println $OSTYPE unless ($AUTORUN);
- 
--unless ($OSTYPE =~ /linux/i || $OSTYPE =~ /darwin/i || $OSTYPE eq 'win') {
-+unless ($OSTYPE =~ /linux/i || $OSTYPE =~ /darwin/i || $OSTYPE eq 'win' || $OSTYPE eq 'NetBSD') {
-     println "configure: error: unsupported system '$OSTYPE'";
-     exit 1;
- }
- 
- print "checking machine architecture... " unless ($AUTORUN);
- println $MARCH unless ($AUTORUN);
--unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) {
-+unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i || $MARCH =~ /amd64/i) {
-     println "configure: error: unsupported architecture '$OSTYPE'";
-     exit 1;
- }
-@@ -300,6 +300,8 @@ if ($MARCH =~ /x86_64/i) {
-     $BITS = '32_64';
- } elsif ($MARCH =~ /i?86/i) {
-     $BITS = 32;
-+} elsif ($MARCH =~ /amd64/i) {
-+    $BITS = 64;
- } else {
-     die "unrecognized Architecture '$ARCH'";
- }
-@@ -329,6 +331,15 @@ if ($OSTYPE =~ /linux/i) {
-     $TOOLS = 'clang' unless ($TOOLS);
- } elsif ($OSTYPE eq 'win') {
-     $TOOLS = 'vc++';
-+} elsif ($OSTYPE =~ /NetBSD/i) {
-+    $LPFX = 'lib';
-+    $OBJX = 'o';
-+    $LOBX = 'pic.o';
-+    $LIBX = 'a';
-+    $SHLX = 'so';
-+    $EXEX = '';
-+    $OSINC = 'unix';
-+    $TOOLS = 'gcc' unless ($TOOLS);
- } else {
-     die "unrecognized OS '$OSTYPE'";
- }
diff --git a/ngs-sdk-all/patches/patch-ngs-python_setup_konfigure.perl b/ngs-sdk-all/patches/patch-ngs-python_setup_konfigure.perl
deleted file mode 100644
index db3960b913..0000000000
--- a/ngs-sdk-all/patches/patch-ngs-python_setup_konfigure.perl
+++ /dev/null
@@ -1,46 +0,0 @@
-$NetBSD$
-
---- ngs-python/setup/konfigure.perl.orig	2015-11-23 18:38:45.000000000 +0000
-+++ ngs-python/setup/konfigure.perl
-@@ -198,14 +198,14 @@ print "checking system type... " unless
- my ($OS, $ARCH, $OSTYPE, $MARCH, @ARCHITECTURES) = OsArch();
- println $OSTYPE unless ($AUTORUN);
- 
--unless ($OSTYPE =~ /linux/i || $OSTYPE =~ /darwin/i || $OSTYPE eq 'win') {
-+unless ($OSTYPE =~ /linux/i || $OSTYPE =~ /darwin/i || $OSTYPE eq 'win' || $OSTYPE eq 'NetBSD') {
-     println "configure: error: unsupported system '$OSTYPE'";
-     exit 1;
- }
- 
- print "checking machine architecture... " unless ($AUTORUN);
- println $MARCH unless ($AUTORUN);
--unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) {
-+unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i || $MARCH =~ /amd64/i) {
-     println "configure: error: unsupported architecture '$OSTYPE'";
-     exit 1;
- }
-@@ -300,6 +300,8 @@ if ($MARCH =~ /x86_64/i) {
-     $BITS = '32_64';
- } elsif ($MARCH =~ /i?86/i) {
-     $BITS = 32;
-+} elsif ($MARCH =~ /amd64/i) {
-+    $BITS = 64;
- } else {
-     die "unrecognized Architecture '$ARCH'";
- }
-@@ -329,6 +331,15 @@ if ($OSTYPE =~ /linux/i) {
-     $TOOLS = 'clang' unless ($TOOLS);
- } elsif ($OSTYPE eq 'win') {
-     $TOOLS = 'vc++';
-+} elsif ($OSTYPE =~ /NetBSD/i) {
-+    $LPFX = 'lib';
-+    $OBJX = 'o';
-+    $LOBX = 'pic.o';
-+    $LIBX = 'a';
-+    $SHLX = 'so';
-+    $EXEX = '';
-+    $OSINC = 'unix';
-+    $TOOLS = 'gcc' unless ($TOOLS);
- } else {
-     die "unrecognized OS '$OSTYPE'";
- }
diff --git a/ngs-sdk-all/patches/patch-ngs-sdk_setup_konfigure.perl b/ngs-sdk-all/patches/patch-ngs-sdk_setup_konfigure.perl
deleted file mode 100644
index 5f51feba33..0000000000
--- a/ngs-sdk-all/patches/patch-ngs-sdk_setup_konfigure.perl
+++ /dev/null
@@ -1,46 +0,0 @@
-$NetBSD$
-
---- ngs-sdk/setup/konfigure.perl.orig	2015-11-23 18:38:45.000000000 +0000
-+++ ngs-sdk/setup/konfigure.perl
-@@ -198,14 +198,14 @@ print "checking system type... " unless
- my ($OS, $ARCH, $OSTYPE, $MARCH, @ARCHITECTURES) = OsArch();
- println $OSTYPE unless ($AUTORUN);
- 
--unless ($OSTYPE =~ /linux/i || $OSTYPE =~ /darwin/i || $OSTYPE eq 'win') {
-+unless ($OSTYPE =~ /linux/i || $OSTYPE =~ /darwin/i || $OSTYPE eq 'win' || $OSTYPE eq 'NetBSD') {
-     println "configure: error: unsupported system '$OSTYPE'";
-     exit 1;
- }
- 
- print "checking machine architecture... " unless ($AUTORUN);
- println $MARCH unless ($AUTORUN);
--unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) {
-+unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i || $MARCH =~ /amd64/i) {
-     println "configure: error: unsupported architecture '$OSTYPE'";
-     exit 1;
- }
-@@ -300,6 +300,8 @@ if ($MARCH =~ /x86_64/i) {
-     $BITS = '32_64';
- } elsif ($MARCH =~ /i?86/i) {
-     $BITS = 32;
-+} elsif ($MARCH =~ /amd64/i) {
-+    $BITS = 64;
- } else {
-     die "unrecognized Architecture '$ARCH'";
- }
-@@ -329,6 +331,15 @@ if ($OSTYPE =~ /linux/i) {
-     $TOOLS = 'clang' unless ($TOOLS);
- } elsif ($OSTYPE eq 'win') {
-     $TOOLS = 'vc++';
-+} elsif ($OSTYPE =~ /NetBSD/i) {
-+    $LPFX = 'lib';
-+    $OBJX = 'o';
-+    $LOBX = 'pic.o';
-+    $LIBX = 'a';
-+    $SHLX = 'so';
-+    $EXEX = '';
-+    $OSINC = 'unix';
-+    $TOOLS = 'gcc' unless ($TOOLS);
- } else {
-     die "unrecognized OS '$OSTYPE'";
- }
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