py-anvio: Enable pysam dep, switch to newer hmmer

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Tue Nov 6 09:10:21 2018 -0600
Changeset:	551b23198920449b776b330136a9de6b6f2a28f1

Modified Files:
	py-anvio/Makefile

Log Message:
py-anvio: Enable pysam dep, switch to newer hmmer

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=551b23198920449b776b330136a9de6b6f2a28f1

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 py-anvio/Makefile | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diffs:
diff --git a/py-anvio/Makefile b/py-anvio/Makefile
index 63aa48f942..a694192bee 100644
--- a/py-anvio/Makefile
+++ b/py-anvio/Makefile
@@ -24,7 +24,7 @@ COMMENT=	Analysis and visualization platform for 'omics data
 LICENSE=	gnu-gpl-v3
 
 DEPENDS=	samtools>0:../../biology/samtools \
-		hmmer>0:../../biology/hmmer \
+		hmmer>0:../../wip/hmmer \
 		FastTree>0:../../wip/fasttree \
 		muscle>0:../../wip/muscle \
 		R>0:../../math/R \
@@ -47,12 +47,11 @@ DEPENDS=	samtools>0:../../biology/samtools \
 		xssp>0:../../wip/xssp \
 		FAMSA>0:../../wip/famsa \
 		R-optparse>0:../../wip/R-optparse \
+		${PYPKGPREFIX}-pysam>0:../../wip/py-pysam \
 		${PYPKGPREFIX}-ete3>0:../../wip/py-ete3 \
 		${PYPKGPREFIX}-eggnog-mapper>0:../../wip/py-eggnog-mapper \
 		${PYPKGPREFIX}-snakemake>0:../../wip/py-snakemake
 
-#		${PYPKGPREFIX}-pysam>0:../../wip/py-pysam \
-
 USE_TOOLS=	bash
 REPLACE_BASH=	anvio/workflows/metagenomics/test/*.sh tests/*.sh tests/*/*.sh
 REPLACE_BASH+=	sandbox/anvi-script-FASTA-to-contigs-db sandbox/*.sh