vcftools: Clean up, almost done

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Fri Aug 3 16:29:05 2018 -0500
Changeset:	477d3549e4f710ed2a38d0ef98457612f05b8f27

Modified Files:
	vcftools/DESCR
	vcftools/Makefile
	vcftools/TODO

Log Message:
vcftools: Clean up, almost done

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=477d3549e4f710ed2a38d0ef98457612f05b8f27

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 vcftools/DESCR    | 6 ++++--
 vcftools/Makefile | 5 -----
 vcftools/TODO     | 3 ---
 3 files changed, 4 insertions(+), 10 deletions(-)

diffs:
diff --git a/vcftools/DESCR b/vcftools/DESCR
index 3bb9368e39..6bcdd2b777 100644
--- a/vcftools/DESCR
+++ b/vcftools/DESCR
@@ -1,2 +1,4 @@
-A set of tools written in Perl and C++ for working with VCF files, such as
-those generated by the 1000 Genomes Project.
+VCFtools is a program package designed for working with VCF files, such
+as those generated by the 1000 Genomes Project. The aim of VCFtools is to
+provide easily accessible methods for working with complex genetic variation
+data in the form of VCF files.
diff --git a/vcftools/Makefile b/vcftools/Makefile
index c3ad4a20cc..d99b112538 100644
--- a/vcftools/Makefile
+++ b/vcftools/Makefile
@@ -17,13 +17,8 @@ USE_TOOLS+=	autoconf automake autoreconf gmake perl pkg-config
 GNU_CONFIGURE=	yes
 REPLACE_PERL=	src/perl/*
 
-# No zlib.pc on FreeBSD 9.x
-CONFIGURE_ENV+=	ZLIB_CFLAGS=" " ZLIB_LIBS="-lz"
-
 pre-configure:
 	cd ${WRKSRC} && autoreconf -if
 
 .include "../../devel/zlib/buildlink3.mk"
-# Causes configure to fail.  Perl modules are prebuilt.
-#.include "../../lang/perl5/module.mk"
 .include "../../mk/bsd.pkg.mk"
diff --git a/vcftools/TODO b/vcftools/TODO
index f51bd46f96..94e8b9c6e1 100644
--- a/vcftools/TODO
+++ b/vcftools/TODO
@@ -1,4 +1 @@
 Use perl path var in plist
-
-This package has known vulnerabilities, please investigate and fix if possible:
- CVE-2018-11099, CVE-2018-11129, CVE-2018-11130