samtools: Remove extraneous files, clean up Makefile

[Jason Bacon <bacon4000%gmail.com@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon4000%gmail.com@localhost>
Pushed By:	outpaddling
Date:		Thu May 25 09:00:48 2017 -0500
Changeset:	f2748ff52eafc5850fcb01b8370a157b4cdef9fc

Modified Files:
	samtools/Makefile
Removed Files:
	samtools/TODO
	samtools/files/pkg-message.in

Log Message:
samtools: Remove extraneous files, clean up Makefile

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=f2748ff52eafc5850fcb01b8370a157b4cdef9fc

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 samtools/Makefile             | 2 +-
 samtools/TODO                 | 3 ---
 samtools/files/pkg-message.in | 7 -------
 3 files changed, 1 insertion(+), 11 deletions(-)

diffs:
diff --git a/samtools/Makefile b/samtools/Makefile
index 800eea9cb9..8a643c7b2c 100644
--- a/samtools/Makefile
+++ b/samtools/Makefile
@@ -17,7 +17,7 @@ COMMENT=	Tools for manipulating next-generation sequencing data
 
 LICENSE=	mit
 
-USE_TOOLS+=	autoconf automake autoreconf gmake perl
+USE_TOOLS+=	autoconf automake autoreconf gmake perl:run
 GNU_CONFIGURE=	yes
 REPLACE_PERL=	misc/*.pl misc/plot-bamstats test/test.pl
 REPLACE_PYTHON=	misc/*.py
diff --git a/samtools/TODO b/samtools/TODO
deleted file mode 100644
index 8d76b5b6cc..0000000000
--- a/samtools/TODO
+++ /dev/null
@@ -1,3 +0,0 @@
-
-KSORT_INIT_GENERIC(uint16_t) is expanded to KSORT_INIT_GENERIC(__uint16_t)
-on NetBSD, causing undefined reference to ks_introsort_uint32_t.
diff --git a/samtools/files/pkg-message.in b/samtools/files/pkg-message.in
deleted file mode 100644
index a9ba5d2e1a..0000000000
--- a/samtools/files/pkg-message.in
+++ /dev/null
@@ -1,7 +0,0 @@
-The miscellaneous tools included with Samtools have been installed to
-%%PREFIX%%/bin/samtools_misc 
-
-Add that directory to your path if you want to use these tools.
-
-Some of these tools depend on Perl5, and it will need to be installed to
-use them.