math/py-scipy import failure on netbsd-current

[matthewd%fastmail.us@localhost]

Hello! 

Not sure if this should be reported as netbsd bug, or as a pkgsrc bug.  However, math/py-scipy throws an ImportError due to a missing libm symbol for log1pl.  

$ uname -a
NetBSD snoopy 9.99.96 NetBSD 9.99.96 (GENERIC) #0: Sat Apr 23 11:44:01 UTC 2022  mkrepro%mkrepro.NetBSD.org@localhost:/usr/src/sys/arch/amd64/compile/GENERIC amd64
$ /usr/sbin/pkg_info | grep scipy
py39-scipy-1.8.0    Scientific Algorithms Library for Python
$ python3.9 -c 'import scipy.stats'
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/usr/pkg/lib/python3.9/site-packages/scipy/stats/__init__.py", line 453, in <module>
    from ._stats_py import *
  File "/usr/pkg/lib/python3.9/site-packages/scipy/stats/_stats_py.py", line 38, in <module>
    from scipy.spatial.distance import cdist
  File "/usr/pkg/lib/python3.9/site-packages/scipy/spatial/__init__.py", line 108, in <module>
    from ._geometric_slerp import geometric_slerp
  File "/usr/pkg/lib/python3.9/site-packages/scipy/spatial/_geometric_slerp.py", line 9, in <module>
    from scipy.spatial.distance import euclidean
  File "/usr/pkg/lib/python3.9/site-packages/scipy/spatial/distance.py", line 123, in <module>
    from ..special import rel_entr
  File "/usr/pkg/lib/python3.9/site-packages/scipy/special/__init__.py", line 649, in <module>
    from . import _ufuncs
  File "_ufuncs.pyx", line 1, in init scipy.special._ufuncs
ImportError: /usr/pkg/lib/python3.9/site-packages/scipy/special/_ufuncs_cxx.so: Undefined PLT symbol "log1pl" (symnum = 40)

Does anyone have a recommended workaround ?

-Matthew


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  matthewd%fastmail.us@localhost