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py39-scipy build failure
Hi,
I already have
... Nov 17 03:31 /usr/pkgsrc/packages/All/py39-scipy-1.7.2.tgz
Today's build of the same version fails as follows:
..................................
=> Bootstrap dependency digest>=20211023: found digest-20211023
===> Checking for vulnerabilities in py39-scipy-1.7.2
===> Building for py39-scipy-1.7.2
...
Processing scipy/stats/_boost/src/beta_ufunc.pyx
Processing scipy/stats/_boost/src/binom_ufunc.pyx
Error compiling Cython file:
------------------------------------------------------------
...
from libcpp.memory cimport unique_ptr
np.import_array()
IF not NPY_OLD:
from numpy.random cimport bitgen_t
^
------------------------------------------------------------
biasedurn.pyx:13:4: 'numpy/random.pxd' not found
Traceback (most recent call last):
File "/usr/pkgsrc/math/py-scipy/work/scipy-1.7.2/tools/cythonize.py",
line 324, in <module>
main()
File "/usr/pkgsrc/math/py-scipy/work/scipy-1.7.2/tools/cythonize.py",
line 320, in main
find_process_files(root_dir)
File "/usr/pkgsrc/math/py-scipy/work/scipy-1.7.2/tools/cythonize.py",
line 309, in find_process_files
for result in pool.imap_unordered(lambda args: process(*args), jobs):
File "/usr/pkg/lib/python3.9/multiprocessing/pool.py", line 870, in next
raise value
File "/usr/pkg/lib/python3.9/multiprocessing/pool.py", line 125, in worker
Processing scipy/stats/_boost/src/nbinom_ufunc.pyx
result = (True, func(*args, **kwds))
File "/usr/pkgsrc/math/py-scipy/work/scipy-1.7.2/tools/cythonize.py",
line 309, in <lambda>
for result in pool.imap_unordered(lambda args: process(*args), jobs):
File "/usr/pkgsrc/math/py-scipy/work/scipy-1.7.2/tools/cythonize.py",
line 243, in process
processor_function(fromfile, tofile, cwd=path)
File "/usr/pkgsrc/math/py-scipy/work/scipy-1.7.2/tools/cythonize.py",
line 108, in process_pyx
raise Exception('Cython failed')
Exception: Cython failed
Cythonizing sources
Traceback (most recent call last):
File "/usr/pkgsrc/math/py-scipy/work/scipy-1.7.2/setup.py", line
631, in <module>
setup_package()
File "/usr/pkgsrc/math/py-scipy/work/scipy-1.7.2/setup.py", line
615, in setup_package
generate_cython()
File "/usr/pkgsrc/math/py-scipy/work/scipy-1.7.2/setup.py", line
364, in generate_cython
raise RuntimeError("Running cythonize failed!")
RuntimeError: Running cythonize failed!
*** Error code 1
Stop.
make[1]: stopped in /usr/pkgsrc/math/py-scipy
*** Error code 1
Stop.
make: stopped in /usr/pkgsrc/math/py-scipy
warning: _cython_special_custom.pxi:9:8: Unreachable code
warning: _cython_special_custom.pxi:13:4: Unreachable code
warning: _cython_special_custom.pxi:21:8: Unreachable code
warning: _cython_special_custom.pxi:25:4: Unreachable code
warning: _cython_special_custom.pxi:33:8: Unreachable code
warning: _cython_special_custom.pxi:37:4: Unreachable code
warning: _cython_special_custom.pxi:45:8: Unreachable code
warning: _cython_special_custom.pxi:49:4: Unreachable code
....
Any suggestions?
Chavdar
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