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CVS commit: pkgsrc/math/py-scipy
Module Name: pkgsrc
Committed By: adam
Date: Tue Jun 30 09:57:46 UTC 2026
Modified Files:
pkgsrc/math/py-scipy: Makefile PLIST distinfo
pkgsrc/math/py-scipy/patches: patch-scipy_spatial___ckdtree.pyx
Removed Files:
pkgsrc/math/py-scipy/patches: patch-scipy_stats___unuran_meson.build
patch-subprojects_xsf_include_xsf_amos_amos.h
Log Message:
py-scipy: updated to 1.18.0
SciPy 1.18.0 is the culmination of 6 months of hard work. It contains
many new features, numerous bug-fixes, improved test coverage and better
documentation. There have been a number of deprecations and API changes
in this release, which are documented below. All users are encouraged to
upgrade to this release, as there are a large number of bug-fixes and
optimizations. Before upgrading, we recommend that users check that
their own code does not use deprecated SciPy functionality (to do so,
run your code with ``python -Wd`` and check for ``DeprecationWarning`` s).
Our development attention will now shift to bug-fix releases on the
1.18.x branch, and on adding new features on the main branch.
To generate a diff of this commit:
cvs rdiff -u -r1.107 -r1.108 pkgsrc/math/py-scipy/Makefile
cvs rdiff -u -r1.35 -r1.36 pkgsrc/math/py-scipy/PLIST
cvs rdiff -u -r1.65 -r1.66 pkgsrc/math/py-scipy/distinfo
cvs rdiff -u -r1.4 -r1.5 \
pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx
cvs rdiff -u -r1.1 -r0 \
pkgsrc/math/py-scipy/patches/patch-scipy_stats___unuran_meson.build
cvs rdiff -u -r1.2 -r0 \
pkgsrc/math/py-scipy/patches/patch-subprojects_xsf_include_xsf_amos_amos.h
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
Modified files:
Index: pkgsrc/math/py-scipy/Makefile
diff -u pkgsrc/math/py-scipy/Makefile:1.107 pkgsrc/math/py-scipy/Makefile:1.108
--- pkgsrc/math/py-scipy/Makefile:1.107 Sun Jun 28 15:41:31 2026
+++ pkgsrc/math/py-scipy/Makefile Tue Jun 30 09:57:45 2026
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.107 2026/06/28 15:41:31 wiz Exp $
+# $NetBSD: Makefile,v 1.108 2026/06/30 09:57:45 adam Exp $
-DISTNAME= scipy-1.17.1
+DISTNAME= scipy-1.18.0
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
CATEGORIES= math python
MASTER_SITES= ${MASTER_SITE_PYPI:=s/scipy/}
Index: pkgsrc/math/py-scipy/PLIST
diff -u pkgsrc/math/py-scipy/PLIST:1.35 pkgsrc/math/py-scipy/PLIST:1.36
--- pkgsrc/math/py-scipy/PLIST:1.35 Sun Jan 11 08:15:05 2026
+++ pkgsrc/math/py-scipy/PLIST Tue Jun 30 09:57:45 2026
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.35 2026/01/11 08:15:05 adam Exp $
+@comment $NetBSD: PLIST,v 1.36 2026/06/30 09:57:45 adam Exp $
${PYSITELIB}/${WHEEL_INFODIR}/LICENSE.txt
${PYSITELIB}/${WHEEL_INFODIR}/METADATA
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${PYSITELIB}/scipy/_lib/__init__.py
${PYSITELIB}/scipy/_lib/__init__.pyc
${PYSITELIB}/scipy/_lib/__init__.pyo
${PYSITELIB}/scipy/_lib/_array_api.py
${PYSITELIB}/scipy/_lib/_array_api.pyc
${PYSITELIB}/scipy/_lib/_array_api.pyo
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${PYSITELIB}/scipy/_lib/_array_api_docs_tables.py
${PYSITELIB}/scipy/_lib/_array_api_docs_tables.pyc
${PYSITELIB}/scipy/_lib/_array_api_docs_tables.pyo
@@ -51,9 +311,6 @@ ${PYSITELIB}/scipy/_lib/_fpumode.so
${PYSITELIB}/scipy/_lib/_gcutils.py
${PYSITELIB}/scipy/_lib/_gcutils.pyc
${PYSITELIB}/scipy/_lib/_gcutils.pyo
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${PYSITELIB}/scipy/_lib/_public_api.py
${PYSITELIB}/scipy/_lib/_public_api.pyc
${PYSITELIB}/scipy/_lib/_public_api.pyo
@@ -66,9 +323,6 @@ ${PYSITELIB}/scipy/_lib/_test_deprecatio
${PYSITELIB}/scipy/_lib/_testutils.py
${PYSITELIB}/scipy/_lib/_testutils.pyc
${PYSITELIB}/scipy/_lib/_testutils.pyo
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${PYSITELIB}/scipy/_lib/_uarray/LICENSE
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${PYSITELIB}/scipy/_lib/_uarray/__init__.pyc
@@ -80,182 +334,6 @@ ${PYSITELIB}/scipy/_lib/_uarray/_uarray.
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-${PYSITELIB}/scipy/_lib/pyprima/common/preproc.py
-${PYSITELIB}/scipy/_lib/pyprima/common/preproc.pyc
-${PYSITELIB}/scipy/_lib/pyprima/common/preproc.pyo
-${PYSITELIB}/scipy/_lib/pyprima/common/present.py
-${PYSITELIB}/scipy/_lib/pyprima/common/present.pyc
-${PYSITELIB}/scipy/_lib/pyprima/common/present.pyo
-${PYSITELIB}/scipy/_lib/pyprima/common/ratio.py
-${PYSITELIB}/scipy/_lib/pyprima/common/ratio.pyc
-${PYSITELIB}/scipy/_lib/pyprima/common/ratio.pyo
-${PYSITELIB}/scipy/_lib/pyprima/common/redrho.py
-${PYSITELIB}/scipy/_lib/pyprima/common/redrho.pyc
-${PYSITELIB}/scipy/_lib/pyprima/common/redrho.pyo
-${PYSITELIB}/scipy/_lib/pyprima/common/selectx.py
-${PYSITELIB}/scipy/_lib/pyprima/common/selectx.pyc
-${PYSITELIB}/scipy/_lib/pyprima/common/selectx.pyo
${PYSITELIB}/scipy/_lib/tests/__init__.py
${PYSITELIB}/scipy/_lib/tests/__init__.pyc
${PYSITELIB}/scipy/_lib/tests/__init__.pyo
${PYSITELIB}/scipy/_lib/tests/test__gcutils.py
${PYSITELIB}/scipy/_lib/tests/test__gcutils.pyc
${PYSITELIB}/scipy/_lib/tests/test__gcutils.pyo
-${PYSITELIB}/scipy/_lib/tests/test__pep440.py
-${PYSITELIB}/scipy/_lib/tests/test__pep440.pyc
-${PYSITELIB}/scipy/_lib/tests/test__pep440.pyo
${PYSITELIB}/scipy/_lib/tests/test__testutils.py
${PYSITELIB}/scipy/_lib/tests/test__testutils.pyc
${PYSITELIB}/scipy/_lib/tests/test__testutils.pyo
@@ -383,42 +380,51 @@ ${PYSITELIB}/scipy/_lib/tests/test_publi
${PYSITELIB}/scipy/_lib/tests/test_scipy_version.py
${PYSITELIB}/scipy/_lib/tests/test_scipy_version.pyc
${PYSITELIB}/scipy/_lib/tests/test_scipy_version.pyo
-${PYSITELIB}/scipy/_lib/tests/test_tmpdirs.py
-${PYSITELIB}/scipy/_lib/tests/test_tmpdirs.pyc
-${PYSITELIB}/scipy/_lib/tests/test_tmpdirs.pyo
${PYSITELIB}/scipy/_lib/tests/test_warnings.py
${PYSITELIB}/scipy/_lib/tests/test_warnings.pyc
${PYSITELIB}/scipy/_lib/tests/test_warnings.pyo
+${PYSITELIB}/scipy/_lib/tests/test_xp_capabilities.py
+${PYSITELIB}/scipy/_lib/tests/test_xp_capabilities.pyc
+${PYSITELIB}/scipy/_lib/tests/test_xp_capabilities.pyo
${PYSITELIB}/scipy/_lib/uarray.py
${PYSITELIB}/scipy/_lib/uarray.pyc
${PYSITELIB}/scipy/_lib/uarray.pyo
${PYSITELIB}/scipy/cluster/__init__.py
${PYSITELIB}/scipy/cluster/__init__.pyc
${PYSITELIB}/scipy/cluster/__init__.pyo
-${PYSITELIB}/scipy/cluster/_hierarchy.so
-${PYSITELIB}/scipy/cluster/_optimal_leaf_ordering.so
-${PYSITELIB}/scipy/cluster/_vq.so
-${PYSITELIB}/scipy/cluster/hierarchy.py
-${PYSITELIB}/scipy/cluster/hierarchy.pyc
-${PYSITELIB}/scipy/cluster/hierarchy.pyo
-${PYSITELIB}/scipy/cluster/tests/__init__.py
-${PYSITELIB}/scipy/cluster/tests/__init__.pyc
-${PYSITELIB}/scipy/cluster/tests/__init__.pyo
-${PYSITELIB}/scipy/cluster/tests/hierarchy_test_data.py
-${PYSITELIB}/scipy/cluster/tests/hierarchy_test_data.pyc
-${PYSITELIB}/scipy/cluster/tests/hierarchy_test_data.pyo
-${PYSITELIB}/scipy/cluster/tests/test_disjoint_set.py
-${PYSITELIB}/scipy/cluster/tests/test_disjoint_set.pyc
-${PYSITELIB}/scipy/cluster/tests/test_disjoint_set.pyo
-${PYSITELIB}/scipy/cluster/tests/test_hierarchy.py
-${PYSITELIB}/scipy/cluster/tests/test_hierarchy.pyc
-${PYSITELIB}/scipy/cluster/tests/test_hierarchy.pyo
-${PYSITELIB}/scipy/cluster/tests/test_vq.py
-${PYSITELIB}/scipy/cluster/tests/test_vq.pyc
-${PYSITELIB}/scipy/cluster/tests/test_vq.pyo
-${PYSITELIB}/scipy/cluster/vq.py
-${PYSITELIB}/scipy/cluster/vq.pyc
-${PYSITELIB}/scipy/cluster/vq.pyo
+${PYSITELIB}/scipy/cluster/hierarchy/__init__.py
+${PYSITELIB}/scipy/cluster/hierarchy/__init__.pyc
+${PYSITELIB}/scipy/cluster/hierarchy/__init__.pyo
+${PYSITELIB}/scipy/cluster/hierarchy/_hierarchy.so
+${PYSITELIB}/scipy/cluster/hierarchy/_hierarchy_impl.py
+${PYSITELIB}/scipy/cluster/hierarchy/_hierarchy_impl.pyc
+${PYSITELIB}/scipy/cluster/hierarchy/_hierarchy_impl.pyo
+${PYSITELIB}/scipy/cluster/hierarchy/_optimal_leaf_ordering.so
+${PYSITELIB}/scipy/cluster/hierarchy/tests/__init__.py
+${PYSITELIB}/scipy/cluster/hierarchy/tests/__init__.pyc
+${PYSITELIB}/scipy/cluster/hierarchy/tests/__init__.pyo
+${PYSITELIB}/scipy/cluster/hierarchy/tests/hierarchy_test_data.py
+${PYSITELIB}/scipy/cluster/hierarchy/tests/hierarchy_test_data.pyc
+${PYSITELIB}/scipy/cluster/hierarchy/tests/hierarchy_test_data.pyo
+${PYSITELIB}/scipy/cluster/hierarchy/tests/test_disjoint_set.py
+${PYSITELIB}/scipy/cluster/hierarchy/tests/test_disjoint_set.pyc
+${PYSITELIB}/scipy/cluster/hierarchy/tests/test_disjoint_set.pyo
+${PYSITELIB}/scipy/cluster/hierarchy/tests/test_hierarchy.py
+${PYSITELIB}/scipy/cluster/hierarchy/tests/test_hierarchy.pyc
+${PYSITELIB}/scipy/cluster/hierarchy/tests/test_hierarchy.pyo
+${PYSITELIB}/scipy/cluster/vq/__init__.py
+${PYSITELIB}/scipy/cluster/vq/__init__.pyc
+${PYSITELIB}/scipy/cluster/vq/__init__.pyo
+${PYSITELIB}/scipy/cluster/vq/_vq.so
+${PYSITELIB}/scipy/cluster/vq/_vq_impl.py
+${PYSITELIB}/scipy/cluster/vq/_vq_impl.pyc
+${PYSITELIB}/scipy/cluster/vq/_vq_impl.pyo
+${PYSITELIB}/scipy/cluster/vq/tests/__init__.py
+${PYSITELIB}/scipy/cluster/vq/tests/__init__.pyc
+${PYSITELIB}/scipy/cluster/vq/tests/__init__.pyo
+${PYSITELIB}/scipy/cluster/vq/tests/test_vq.py
+${PYSITELIB}/scipy/cluster/vq/tests/test_vq.pyc
+${PYSITELIB}/scipy/cluster/vq/tests/test_vq.pyo
${PYSITELIB}/scipy/conftest.py
${PYSITELIB}/scipy/conftest.pyc
${PYSITELIB}/scipy/conftest.pyo
@@ -494,6 +500,29 @@ ${PYSITELIB}/scipy/fft/_basic_backend.py
${PYSITELIB}/scipy/fft/_debug_backends.py
${PYSITELIB}/scipy/fft/_debug_backends.pyc
${PYSITELIB}/scipy/fft/_debug_backends.pyo
+${PYSITELIB}/scipy/fft/_duccfft/LICENSE.md
+${PYSITELIB}/scipy/fft/_duccfft/__init__.py
+${PYSITELIB}/scipy/fft/_duccfft/__init__.pyc
+${PYSITELIB}/scipy/fft/_duccfft/__init__.pyo
+${PYSITELIB}/scipy/fft/_duccfft/basic.py
+${PYSITELIB}/scipy/fft/_duccfft/basic.pyc
+${PYSITELIB}/scipy/fft/_duccfft/basic.pyo
+${PYSITELIB}/scipy/fft/_duccfft/helper.py
+${PYSITELIB}/scipy/fft/_duccfft/helper.pyc
+${PYSITELIB}/scipy/fft/_duccfft/helper.pyo
+${PYSITELIB}/scipy/fft/_duccfft/pyduccfft.so
+${PYSITELIB}/scipy/fft/_duccfft/realtransforms.py
+${PYSITELIB}/scipy/fft/_duccfft/realtransforms.pyc
+${PYSITELIB}/scipy/fft/_duccfft/realtransforms.pyo
+${PYSITELIB}/scipy/fft/_duccfft/tests/__init__.py
+${PYSITELIB}/scipy/fft/_duccfft/tests/__init__.pyc
+${PYSITELIB}/scipy/fft/_duccfft/tests/__init__.pyo
+${PYSITELIB}/scipy/fft/_duccfft/tests/test_basic.py
+${PYSITELIB}/scipy/fft/_duccfft/tests/test_basic.pyc
+${PYSITELIB}/scipy/fft/_duccfft/tests/test_basic.pyo
+${PYSITELIB}/scipy/fft/_duccfft/tests/test_real_transforms.py
+${PYSITELIB}/scipy/fft/_duccfft/tests/test_real_transforms.pyc
+${PYSITELIB}/scipy/fft/_duccfft/tests/test_real_transforms.pyo
${PYSITELIB}/scipy/fft/_fftlog.py
${PYSITELIB}/scipy/fft/_fftlog.pyc
${PYSITELIB}/scipy/fft/_fftlog.pyo
@@ -503,29 +532,6 @@ ${PYSITELIB}/scipy/fft/_fftlog_backend.p
${PYSITELIB}/scipy/fft/_helper.py
${PYSITELIB}/scipy/fft/_helper.pyc
${PYSITELIB}/scipy/fft/_helper.pyo
-${PYSITELIB}/scipy/fft/_pocketfft/LICENSE.md
-${PYSITELIB}/scipy/fft/_pocketfft/__init__.py
-${PYSITELIB}/scipy/fft/_pocketfft/__init__.pyc
-${PYSITELIB}/scipy/fft/_pocketfft/__init__.pyo
-${PYSITELIB}/scipy/fft/_pocketfft/basic.py
-${PYSITELIB}/scipy/fft/_pocketfft/basic.pyc
-${PYSITELIB}/scipy/fft/_pocketfft/basic.pyo
-${PYSITELIB}/scipy/fft/_pocketfft/helper.py
-${PYSITELIB}/scipy/fft/_pocketfft/helper.pyc
-${PYSITELIB}/scipy/fft/_pocketfft/helper.pyo
-${PYSITELIB}/scipy/fft/_pocketfft/pypocketfft.so
-${PYSITELIB}/scipy/fft/_pocketfft/realtransforms.py
-${PYSITELIB}/scipy/fft/_pocketfft/realtransforms.pyc
-${PYSITELIB}/scipy/fft/_pocketfft/realtransforms.pyo
-${PYSITELIB}/scipy/fft/_pocketfft/tests/__init__.py
-${PYSITELIB}/scipy/fft/_pocketfft/tests/__init__.pyc
-${PYSITELIB}/scipy/fft/_pocketfft/tests/__init__.pyo
-${PYSITELIB}/scipy/fft/_pocketfft/tests/test_basic.py
-${PYSITELIB}/scipy/fft/_pocketfft/tests/test_basic.pyc
-${PYSITELIB}/scipy/fft/_pocketfft/tests/test_basic.pyo
-${PYSITELIB}/scipy/fft/_pocketfft/tests/test_real_transforms.py
-${PYSITELIB}/scipy/fft/_pocketfft/tests/test_real_transforms.pyc
-${PYSITELIB}/scipy/fft/_pocketfft/tests/test_real_transforms.pyo
${PYSITELIB}/scipy/fft/_realtransforms.py
${PYSITELIB}/scipy/fft/_realtransforms.pyc
${PYSITELIB}/scipy/fft/_realtransforms.pyo
@@ -747,7 +753,6 @@ ${PYSITELIB}/scipy/interpolate/_bsplines
${PYSITELIB}/scipy/interpolate/_cubic.py
${PYSITELIB}/scipy/interpolate/_cubic.pyc
${PYSITELIB}/scipy/interpolate/_cubic.pyo
-${PYSITELIB}/scipy/interpolate/_dfitpack.so
${PYSITELIB}/scipy/interpolate/_dierckx.so
${PYSITELIB}/scipy/interpolate/_fitpack.so
${PYSITELIB}/scipy/interpolate/_fitpack2.py
@@ -795,6 +800,9 @@ ${PYSITELIB}/scipy/interpolate/_rbfinter
${PYSITELIB}/scipy/interpolate/_rbfinterp_xp.py
${PYSITELIB}/scipy/interpolate/_rbfinterp_xp.pyc
${PYSITELIB}/scipy/interpolate/_rbfinterp_xp.pyo
+${PYSITELIB}/scipy/interpolate/_regrid.py
+${PYSITELIB}/scipy/interpolate/_regrid.pyc
+${PYSITELIB}/scipy/interpolate/_regrid.pyo
${PYSITELIB}/scipy/interpolate/_rgi.py
${PYSITELIB}/scipy/interpolate/_rgi.pyc
${PYSITELIB}/scipy/interpolate/_rgi.pyo
@@ -1047,6 +1055,7 @@ ${PYSITELIB}/scipy/io/matlab/tests/data/
${PYSITELIB}/scipy/io/matlab/tests/data/testemptycell_7.4_GLNX86.mat
${PYSITELIB}/scipy/io/matlab/tests/data/testfunc_7.4_GLNX86.mat
${PYSITELIB}/scipy/io/matlab/tests/data/testhdf5_7.4_GLNX86.mat
+${PYSITELIB}/scipy/io/matlab/tests/data/testmatlabstring_7_WIN64.mat
${PYSITELIB}/scipy/io/matlab/tests/data/testmatrix_4.2c_SOL2.mat
${PYSITELIB}/scipy/io/matlab/tests/data/testmatrix_6.1_SOL2.mat
${PYSITELIB}/scipy/io/matlab/tests/data/testmatrix_6.5.1_GLNX86.mat
@@ -1174,6 +1183,7 @@ ${PYSITELIB}/scipy/io/tests/data/fortran
${PYSITELIB}/scipy/io/tests/data/fortran-si4-1x1x5.dat
${PYSITELIB}/scipy/io/tests/data/fortran-si4-1x1x7.dat
${PYSITELIB}/scipy/io/tests/data/fortran-si4-1x3x5.dat
+${PYSITELIB}/scipy/io/tests/data/identification.sav
${PYSITELIB}/scipy/io/tests/data/invalid_pointer.sav
${PYSITELIB}/scipy/io/tests/data/null_pointer.sav
${PYSITELIB}/scipy/io/tests/data/scalar_byte.sav
@@ -1256,7 +1266,6 @@ ${PYSITELIB}/scipy/linalg/_basic.py
${PYSITELIB}/scipy/linalg/_basic.pyc
${PYSITELIB}/scipy/linalg/_basic.pyo
${PYSITELIB}/scipy/linalg/_batched_linalg.so
-${PYSITELIB}/scipy/linalg/_blas_subroutines.h
${PYSITELIB}/scipy/linalg/_cythonized_array_utils.pxd
${PYSITELIB}/scipy/linalg/_cythonized_array_utils.pyi
${PYSITELIB}/scipy/linalg/_cythonized_array_utils.so
@@ -1276,8 +1285,6 @@ ${PYSITELIB}/scipy/linalg/_decomp_ldl.py
${PYSITELIB}/scipy/linalg/_decomp_lu.py
${PYSITELIB}/scipy/linalg/_decomp_lu.pyc
${PYSITELIB}/scipy/linalg/_decomp_lu.pyo
-${PYSITELIB}/scipy/linalg/_decomp_lu_cython.pyi
-${PYSITELIB}/scipy/linalg/_decomp_lu_cython.so
${PYSITELIB}/scipy/linalg/_decomp_polar.py
${PYSITELIB}/scipy/linalg/_decomp_polar.pyc
${PYSITELIB}/scipy/linalg/_decomp_polar.pyo
@@ -1299,17 +1306,14 @@ ${PYSITELIB}/scipy/linalg/_expm_frechet.
${PYSITELIB}/scipy/linalg/_expm_frechet.pyo
${PYSITELIB}/scipy/linalg/_fblas.so
${PYSITELIB}/scipy/linalg/_flapack.so
-${PYSITELIB}/scipy/linalg/_lapack_subroutines.h
+${PYSITELIB}/scipy/linalg/_internal_matfuncs.so
${PYSITELIB}/scipy/linalg/_linalg_pythran.so
${PYSITELIB}/scipy/linalg/_matfuncs.py
${PYSITELIB}/scipy/linalg/_matfuncs.pyc
${PYSITELIB}/scipy/linalg/_matfuncs.pyo
-${PYSITELIB}/scipy/linalg/_matfuncs_expm.pyi
-${PYSITELIB}/scipy/linalg/_matfuncs_expm.so
${PYSITELIB}/scipy/linalg/_matfuncs_inv_ssq.py
${PYSITELIB}/scipy/linalg/_matfuncs_inv_ssq.pyc
${PYSITELIB}/scipy/linalg/_matfuncs_inv_ssq.pyo
-${PYSITELIB}/scipy/linalg/_matfuncs_schur_sqrtm.so
${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm.py
${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm.pyc
${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm.pyo
@@ -1340,10 +1344,8 @@ ${PYSITELIB}/scipy/linalg/blas.py
${PYSITELIB}/scipy/linalg/blas.pyc
${PYSITELIB}/scipy/linalg/blas.pyo
${PYSITELIB}/scipy/linalg/cython_blas.pxd
-${PYSITELIB}/scipy/linalg/cython_blas.pyx
${PYSITELIB}/scipy/linalg/cython_blas.so
${PYSITELIB}/scipy/linalg/cython_lapack.pxd
-${PYSITELIB}/scipy/linalg/cython_lapack.pyx
${PYSITELIB}/scipy/linalg/cython_lapack.so
${PYSITELIB}/scipy/linalg/decomp.py
${PYSITELIB}/scipy/linalg/decomp.pyc
@@ -1383,6 +1385,7 @@ ${PYSITELIB}/scipy/linalg/tests/__init__
${PYSITELIB}/scipy/linalg/tests/__init__.pyo
${PYSITELIB}/scipy/linalg/tests/_cython_examples/extending.pyx
${PYSITELIB}/scipy/linalg/tests/_cython_examples/meson.build
+${PYSITELIB}/scipy/linalg/tests/cython_abi_signatures.json
${PYSITELIB}/scipy/linalg/tests/data/carex_15_data.npz
${PYSITELIB}/scipy/linalg/tests/data/carex_18_data.npz
${PYSITELIB}/scipy/linalg/tests/data/carex_19_data.npz
@@ -1398,6 +1401,9 @@ ${PYSITELIB}/scipy/linalg/tests/test_bat
${PYSITELIB}/scipy/linalg/tests/test_blas.py
${PYSITELIB}/scipy/linalg/tests/test_blas.pyc
${PYSITELIB}/scipy/linalg/tests/test_blas.pyo
+${PYSITELIB}/scipy/linalg/tests/test_cython_abi.py
+${PYSITELIB}/scipy/linalg/tests/test_cython_abi.pyc
+${PYSITELIB}/scipy/linalg/tests/test_cython_abi.pyo
${PYSITELIB}/scipy/linalg/tests/test_cython_blas.py
${PYSITELIB}/scipy/linalg/tests/test_cython_blas.pyc
${PYSITELIB}/scipy/linalg/tests/test_cython_blas.pyo
@@ -1428,6 +1434,9 @@ ${PYSITELIB}/scipy/linalg/tests/test_dec
${PYSITELIB}/scipy/linalg/tests/test_decomp_update.py
${PYSITELIB}/scipy/linalg/tests/test_decomp_update.pyc
${PYSITELIB}/scipy/linalg/tests/test_decomp_update.pyo
+${PYSITELIB}/scipy/linalg/tests/test_deprecations.py
+${PYSITELIB}/scipy/linalg/tests/test_deprecations.pyc
+${PYSITELIB}/scipy/linalg/tests/test_deprecations.pyo
${PYSITELIB}/scipy/linalg/tests/test_extending.py
${PYSITELIB}/scipy/linalg/tests/test_extending.pyc
${PYSITELIB}/scipy/linalg/tests/test_extending.pyo
@@ -1861,6 +1870,7 @@ ${PYSITELIB}/scipy/optimize/tests/__init
${PYSITELIB}/scipy/optimize/tests/__init__.pyo
${PYSITELIB}/scipy/optimize/tests/_cython_examples/extending.pyx
${PYSITELIB}/scipy/optimize/tests/_cython_examples/meson.build
+${PYSITELIB}/scipy/optimize/tests/cython_abi_signatures.json
${PYSITELIB}/scipy/optimize/tests/test__basinhopping.py
${PYSITELIB}/scipy/optimize/tests/test__basinhopping.pyc
${PYSITELIB}/scipy/optimize/tests/test__basinhopping.pyo
@@ -1906,6 +1916,9 @@ ${PYSITELIB}/scipy/optimize/tests/test_c
${PYSITELIB}/scipy/optimize/tests/test_constraints.py
${PYSITELIB}/scipy/optimize/tests/test_constraints.pyc
${PYSITELIB}/scipy/optimize/tests/test_constraints.pyo
+${PYSITELIB}/scipy/optimize/tests/test_cython_abi.py
+${PYSITELIB}/scipy/optimize/tests/test_cython_abi.pyc
+${PYSITELIB}/scipy/optimize/tests/test_cython_abi.pyo
${PYSITELIB}/scipy/optimize/tests/test_cython_optimize.py
${PYSITELIB}/scipy/optimize/tests/test_cython_optimize.pyc
${PYSITELIB}/scipy/optimize/tests/test_cython_optimize.pyo
@@ -2066,6 +2079,9 @@ ${PYSITELIB}/scipy/signal/_waveforms.pyo
${PYSITELIB}/scipy/signal/_wavelets.py
${PYSITELIB}/scipy/signal/_wavelets.pyc
${PYSITELIB}/scipy/signal/_wavelets.pyo
+${PYSITELIB}/scipy/signal/_whittaker.py
+${PYSITELIB}/scipy/signal/_whittaker.pyc
+${PYSITELIB}/scipy/signal/_whittaker.pyo
${PYSITELIB}/scipy/signal/bsplines.py
${PYSITELIB}/scipy/signal/bsplines.pyc
${PYSITELIB}/scipy/signal/bsplines.pyo
@@ -2096,6 +2112,7 @@ ${PYSITELIB}/scipy/signal/tests/__init__
${PYSITELIB}/scipy/signal/tests/_scipy_spectral_test_shim.py
${PYSITELIB}/scipy/signal/tests/_scipy_spectral_test_shim.pyc
${PYSITELIB}/scipy/signal/tests/_scipy_spectral_test_shim.pyo
+${PYSITELIB}/scipy/signal/tests/data/GLB.Ts+dSST.csv
${PYSITELIB}/scipy/signal/tests/mpsig.py
${PYSITELIB}/scipy/signal/tests/mpsig.pyc
${PYSITELIB}/scipy/signal/tests/mpsig.pyo
@@ -2156,6 +2173,9 @@ ${PYSITELIB}/scipy/signal/tests/test_wav
${PYSITELIB}/scipy/signal/tests/test_wavelets.py
${PYSITELIB}/scipy/signal/tests/test_wavelets.pyc
${PYSITELIB}/scipy/signal/tests/test_wavelets.pyo
+${PYSITELIB}/scipy/signal/tests/test_whittaker.py
+${PYSITELIB}/scipy/signal/tests/test_whittaker.pyc
+${PYSITELIB}/scipy/signal/tests/test_whittaker.pyo
${PYSITELIB}/scipy/signal/tests/test_windows.py
${PYSITELIB}/scipy/signal/tests/test_windows.pyc
${PYSITELIB}/scipy/signal/tests/test_windows.pyo
@@ -2279,6 +2299,9 @@ ${PYSITELIB}/scipy/sparse/csgraph/tests/
${PYSITELIB}/scipy/sparse/csgraph/tests/test_graph_laplacian.py
${PYSITELIB}/scipy/sparse/csgraph/tests/test_graph_laplacian.pyc
${PYSITELIB}/scipy/sparse/csgraph/tests/test_graph_laplacian.pyo
+${PYSITELIB}/scipy/sparse/csgraph/tests/test_index_arrays_dtype.py
+${PYSITELIB}/scipy/sparse/csgraph/tests/test_index_arrays_dtype.pyc
+${PYSITELIB}/scipy/sparse/csgraph/tests/test_index_arrays_dtype.pyo
${PYSITELIB}/scipy/sparse/csgraph/tests/test_matching.py
${PYSITELIB}/scipy/sparse/csgraph/tests/test_matching.pyc
${PYSITELIB}/scipy/sparse/csgraph/tests/test_matching.pyo
@@ -2508,8 +2531,6 @@ ${PYSITELIB}/scipy/sparse/sputils.pyo
${PYSITELIB}/scipy/sparse/tests/__init__.py
${PYSITELIB}/scipy/sparse/tests/__init__.pyc
${PYSITELIB}/scipy/sparse/tests/__init__.pyo
-${PYSITELIB}/scipy/sparse/tests/data/csc_py2.npz
-${PYSITELIB}/scipy/sparse/tests/data/csc_py3.npz
${PYSITELIB}/scipy/sparse/tests/test_64bit.py
${PYSITELIB}/scipy/sparse/tests/test_64bit.pyc
${PYSITELIB}/scipy/sparse/tests/test_64bit.pyo
@@ -2796,14 +2817,12 @@ ${PYSITELIB}/scipy/special/_test_interna
${PYSITELIB}/scipy/special/_testutils.py
${PYSITELIB}/scipy/special/_testutils.pyc
${PYSITELIB}/scipy/special/_testutils.pyo
+${PYSITELIB}/scipy/special/_ufunc_tools.py
+${PYSITELIB}/scipy/special/_ufunc_tools.pyc
+${PYSITELIB}/scipy/special/_ufunc_tools.pyo
${PYSITELIB}/scipy/special/_ufuncs.pyi
-${PYSITELIB}/scipy/special/_ufuncs.pyx
${PYSITELIB}/scipy/special/_ufuncs.so
-${PYSITELIB}/scipy/special/_ufuncs_cxx.pxd
-${PYSITELIB}/scipy/special/_ufuncs_cxx.pyx
${PYSITELIB}/scipy/special/_ufuncs_cxx.so
-${PYSITELIB}/scipy/special/_ufuncs_cxx_defs.h
-${PYSITELIB}/scipy/special/_ufuncs_defs.h
${PYSITELIB}/scipy/special/add_newdocs.py
${PYSITELIB}/scipy/special/add_newdocs.pyc
${PYSITELIB}/scipy/special/add_newdocs.pyo
@@ -2830,6 +2849,7 @@ ${PYSITELIB}/scipy/special/tests/__init_
${PYSITELIB}/scipy/special/tests/__init__.pyo
${PYSITELIB}/scipy/special/tests/_cython_examples/extending.pyx
${PYSITELIB}/scipy/special/tests/_cython_examples/meson.build
+${PYSITELIB}/scipy/special/tests/cython_abi_signatures.json
${PYSITELIB}/scipy/special/tests/data/__init__.py
${PYSITELIB}/scipy/special/tests/data/__init__.pyc
${PYSITELIB}/scipy/special/tests/data/__init__.pyo
@@ -2860,6 +2880,9 @@ ${PYSITELIB}/scipy/special/tests/test_ce
${PYSITELIB}/scipy/special/tests/test_cosine_distr.py
${PYSITELIB}/scipy/special/tests/test_cosine_distr.pyc
${PYSITELIB}/scipy/special/tests/test_cosine_distr.pyo
+${PYSITELIB}/scipy/special/tests/test_cython_abi.py
+${PYSITELIB}/scipy/special/tests/test_cython_abi.pyc
+${PYSITELIB}/scipy/special/tests/test_cython_abi.pyo
${PYSITELIB}/scipy/special/tests/test_cython_special.py
${PYSITELIB}/scipy/special/tests/test_cython_special.pyc
${PYSITELIB}/scipy/special/tests/test_cython_special.pyo
@@ -2995,6 +3018,9 @@ ${PYSITELIB}/scipy/special/tests/test_su
${PYSITELIB}/scipy/special/tests/test_trig.py
${PYSITELIB}/scipy/special/tests/test_trig.pyc
${PYSITELIB}/scipy/special/tests/test_trig.pyo
+${PYSITELIB}/scipy/special/tests/test_ufunc_infra.py
+${PYSITELIB}/scipy/special/tests/test_ufunc_infra.pyc
+${PYSITELIB}/scipy/special/tests/test_ufunc_infra.pyo
${PYSITELIB}/scipy/special/tests/test_ufunc_signatures.py
${PYSITELIB}/scipy/special/tests/test_ufunc_signatures.pyc
${PYSITELIB}/scipy/special/tests/test_ufunc_signatures.pyo
@@ -3296,6 +3322,16 @@ ${PYSITELIB}/scipy/stats/tests/test_fast
${PYSITELIB}/scipy/stats/tests/test_fit.py
${PYSITELIB}/scipy/stats/tests/test_fit.pyc
${PYSITELIB}/scipy/stats/tests/test_fit.pyo
+${PYSITELIB}/scipy/stats/tests/test_generation/generate_fisher_exact_results_from_r.R
+${PYSITELIB}/scipy/stats/tests/test_generation/reference_distribution_infrastructure_tests.py
+${PYSITELIB}/scipy/stats/tests/test_generation/reference_distribution_infrastructure_tests.pyc
+${PYSITELIB}/scipy/stats/tests/test_generation/reference_distribution_infrastructure_tests.pyo
+${PYSITELIB}/scipy/stats/tests/test_generation/reference_distributions.py
+${PYSITELIB}/scipy/stats/tests/test_generation/reference_distributions.pyc
+${PYSITELIB}/scipy/stats/tests/test_generation/reference_distributions.pyo
+${PYSITELIB}/scipy/stats/tests/test_generation/studentized_range_mpmath_ref.py
+${PYSITELIB}/scipy/stats/tests/test_generation/studentized_range_mpmath_ref.pyc
+${PYSITELIB}/scipy/stats/tests/test_generation/studentized_range_mpmath_ref.pyo
${PYSITELIB}/scipy/stats/tests/test_hypotests.py
${PYSITELIB}/scipy/stats/tests/test_hypotests.pyc
${PYSITELIB}/scipy/stats/tests/test_hypotests.pyo
Index: pkgsrc/math/py-scipy/distinfo
diff -u pkgsrc/math/py-scipy/distinfo:1.65 pkgsrc/math/py-scipy/distinfo:1.66
--- pkgsrc/math/py-scipy/distinfo:1.65 Tue Feb 24 10:05:18 2026
+++ pkgsrc/math/py-scipy/distinfo Tue Jun 30 09:57:45 2026
@@ -1,11 +1,9 @@
-$NetBSD: distinfo,v 1.65 2026/02/24 10:05:18 adam Exp $
+$NetBSD: distinfo,v 1.66 2026/06/30 09:57:45 adam Exp $
-BLAKE2s (scipy-1.17.1.tar.gz) = 1816cf6a8b79e28dfa0f41a6d570f101c491119f45c0d4a0e48e63e4c83a9aed
-SHA512 (scipy-1.17.1.tar.gz) = c2930d9be072057eb25394d6bee7fbe504f1b7c442b5393641ab3ff6bba590d4a76d240eb3a2ef58891bcb449af847de056a8957c591caa8fbf496ce9ce5a9e5
-Size (scipy-1.17.1.tar.gz) = 30573822 bytes
+BLAKE2s (scipy-1.18.0.tar.gz) = a586ec804956f41cd2f27b2977d84b646d07d89d4b5ce19ff52ca7d37d93de11
+SHA512 (scipy-1.18.0.tar.gz) = 77ae3bb64f08fa3f204a8187b4f319f73daea60b8b05bad5564c3809a33aeb091160a6d3e2c7b8e4a5a35202c6c9c3a7d8bc0098332c4c01623eb06ba613bbf3
+Size (scipy-1.18.0.tar.gz) = 30774447 bytes
SHA1 (patch-scipy_ndimage_src___rank__filter__1d.cpp) = 937e0d4308146a4035cf7e17909dcc21f9f7323f
-SHA1 (patch-scipy_spatial___ckdtree.pyx) = 09f79827790edb78204cca7bbe25b5f373834dd4
+SHA1 (patch-scipy_spatial___ckdtree.pyx) = b5fac327f753ad625f61129a7db8f49621653e78
SHA1 (patch-scipy_special_boost__special__functions.h) = eaf46deb56b012ffe467e2e38805c609ba551cff
SHA1 (patch-scipy_special_wright.hh) = 56d65f9ed4bec96f0b927bbe42edd30fc6546454
-SHA1 (patch-scipy_stats___unuran_meson.build) = afa31bf66c9599c8ffc102f2013694305c7e8d03
-SHA1 (patch-subprojects_xsf_include_xsf_amos_amos.h) = c42696279efed5929ffdf73c59137ed3a7d724d0
Index: pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx
diff -u pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx:1.4 pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx:1.5
--- pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx:1.4 Mon Jul 17 19:39:56 2023
+++ pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx Tue Jun 30 09:57:45 2026
@@ -1,4 +1,4 @@
-$NetBSD: patch-scipy_spatial___ckdtree.pyx,v 1.4 2023/07/17 19:39:56 tnn Exp $
+$NetBSD: patch-scipy_spatial___ckdtree.pyx,v 1.5 2026/06/30 09:57:45 adam Exp $
Fix missing isnan/isinf.
Build breaks on at least NetBSD-10.99.4-aarch64 without this:
@@ -6,10 +6,10 @@ Build breaks on at least NetBSD-10.99.4-
scipy/spatial/_ckdtree.cxx: In function 'PyObject* __pyx_pf_5scipy_7spatial_8_ckdtree_7cKDTree_16count_neighbors(__pyx_obj_5scipy_7spatial_8_ckdtree_cKDTree*,
__pyx_obj_5scipy_7spatial_8_ckdtree_cKDTree*, PyObject*, __pyx_t_5numpy_float64_t, PyObject*, int)':
scipy/spatial/_ckdtree.cxx:13392:19: error: 'isinf' was not declared in this scope; did you mean 'std::isinf'?
---- scipy/spatial/_ckdtree.pyx.orig 1970-01-01 00:00:00.000000000 +0000
+--- scipy/spatial/_ckdtree.pyx.orig 2026-06-19 03:00:59.000000000 +0000
+++ scipy/spatial/_ckdtree.pyx
-@@ -16,7 +16,9 @@ cimport numpy as np
- from cpython.mem cimport PyMem_Malloc, PyMem_Free
+@@ -17,7 +17,9 @@ from cpython.mem cimport PyMem_Malloc, P
+ from libcpp.mutex cimport py_safe_call_once, py_safe_once_flag
from libcpp.vector cimport vector
from libcpp cimport bool
-from libc.math cimport isinf, INFINITY
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