CVS commit: pkgsrc/math/R-GPArotation

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sat Jun 13 00:09:48 UTC 2026

Modified Files:
        pkgsrc/math/R-GPArotation: Makefile distinfo

Log Message:
(math/R-GPArotation) Updated 2024.3.1 to 2026.4.1

Changes in GPArotation version 2026.4-1:

  o Comprehensive code cleanup across all functions including GPForth,
    GPFoblq, GPFRSorth, GPFRSoblq, .GPA_RS_engine, vgQ rotation
    criterion functions, Random.Start, and S3 print/summary methods.
    All existing code should run without modification.

  o GPForth and GPFoblq: pre-allocated iteration Table replaces rbind
    growth; step size variable renamed from 'al' to 'alpha'; Table
    column names set at allocation. Legacy implementations retained as
    unexported GPForth.legacy and GPFoblq.legacy for historical
    reference.

  o print.GPArotation and summary.GPArotation: factor sorting and sign
    correction now handled by internal helper .sortGPALoadings, adapted
    from factanal:::sortLoadings (R Core Team). This ensures print and
    summary produce consistent sorted output. The sign correction
    criterion has changed from sign(colSums(L^3)) to colSums(L) < 0,
    matching factanal convention. Results are numerically equivalent
    in all tested cases.

  o print.GPArotation and print.summary.GPArotation: digits argument
    now correctly controls decimal places in loadings and structure
    matrices.

  o print.summary.GPArotation: structure matrix now correctly displays
    factor names as column headers rather than [,1] [,2] [,3].

  o vgQ criterion functions: the Method string has been improved for
    consistency in selected cases (e.g. "Simplimax (k=8)", "Varimax",
    "Varimin", "Bentler"). The criterion value (f) and gradient (Gq)
    are unaffected.

  o Documentation: clarifications throughout, expanded references
    with doi throughout; improved examples including two-step vs
    single-step factanal comparison.

 o  Added dataset CCAI: 14x14 correlation matrix (CCAI_R), factor pattern matrix
    (CCAI_pattern), and factor intercorrelations (CCAI_Phi) for the
    Climate-Friendly Purchasing Choices domain of the Climate Change
    Action Inventory.

  o Three vignettes: GPA1guide (main guide, restructured),
    GPA2local (local minima diagnostics), GPA3bifactor (bifactor
    rotation and reliability coefficients).

  o Unit tests added and expanded: Table structure, single-factor error
    handling, random starts, factor sorting, factanal R >= 4.5.1
    regression, numerical equivalence of updated vs legacy GPForth and
    GPFoblq, and vgQ criterion function regression tests.

  o box20 deprecated. Use box26 instead. box20 will be removed in a
    future version.

  o Removed defunct SourceForge URL from DESCRIPTION.

Changes in GPArotation version 2025.3-1:

  o Added Lp rotation (via Xinyi Liu), including examples, help file,
    and tests.

  o Added automated tests for error messages.

  o Edits to the manual pages.


To generate a diff of this commit:
cvs rdiff -u -r1.1 -r1.2 pkgsrc/math/R-GPArotation/Makefile \
    pkgsrc/math/R-GPArotation/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-GPArotation/Makefile
diff -u pkgsrc/math/R-GPArotation/Makefile:1.1 pkgsrc/math/R-GPArotation/Makefile:1.2
--- pkgsrc/math/R-GPArotation/Makefile:1.1      Tue Nov 12 13:10:50 2024
+++ pkgsrc/math/R-GPArotation/Makefile  Sat Jun 13 00:09:48 2026
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.1 2024/11/12 13:10:50 mef Exp $
+# $NetBSD: Makefile,v 1.2 2026/06/13 00:09:48 mef Exp $
 
 R_PKGNAME=     GPArotation
-R_PKGVER=      2024.3-1
+R_PKGVER=      2026.4-1
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 COMMENT=       Gradient Projection Factor Rotation
Index: pkgsrc/math/R-GPArotation/distinfo
diff -u pkgsrc/math/R-GPArotation/distinfo:1.1 pkgsrc/math/R-GPArotation/distinfo:1.2
--- pkgsrc/math/R-GPArotation/distinfo:1.1      Tue Nov 12 13:10:50 2024
+++ pkgsrc/math/R-GPArotation/distinfo  Sat Jun 13 00:09:48 2026
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.1 2024/11/12 13:10:50 mef Exp $
+$NetBSD: distinfo,v 1.2 2026/06/13 00:09:48 mef Exp $
 
-BLAKE2s (R/GPArotation_2024.3-1.tar.gz) = 357af7d51d6f0d361b7c0171da15303cfe81e98b9490c380c148add785880d42
-SHA512 (R/GPArotation_2024.3-1.tar.gz) = be4ac420aebf2876bef5afbc74e870e81cd7c954815a8c0eab7e130df1b75b495c153dd9d29e5199f3b5f4cb8b3652c6907e1ba2cd33c44195fc30ac1afbe272
-Size (R/GPArotation_2024.3-1.tar.gz) = 313398 bytes
+BLAKE2s (R/GPArotation_2026.4-1.tar.gz) = 96595355b46a267b099a588796edb1766589d3744d710d3c2cc0a410c82ad95f
+SHA512 (R/GPArotation_2026.4-1.tar.gz) = 33948bd9c09a624bb8d1fa08e65b313db21a20563d359d488436f7fd6fc9ecefd03206e0b98399220aafdf9e7e42531eb3221524ac4dbd297815429438970220
+Size (R/GPArotation_2026.4-1.tar.gz) = 972221 bytes