CVS commit: pkgsrc/geography/R-spatstat.random

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Fri Jun 12 14:09:17 UTC 2026

Modified Files:
        pkgsrc/geography/R-spatstat.random: Makefile distinfo

Log Message:
(geography/R-spatstat.random) Updated 3.3.2 to 3.5.0

        CHANGES IN spatstat.random VERSION 3.5-0

OVERVIEW

    o Random diffusion of points.

    o Random unrounding.

    o Truncated Poisson distribution.

    o spatstat.random now imports the packages 'Matrix' and 'spatstat.sparse'.

NEW FUNCTIONS

    o rdiffuse
    Randomly perturb each point in a point pattern by diffusion.

    o rUnround, rUnround.ppp
    Random un-rounding of a discretised point pattern.

    o dpoisnonzero, ppoisnonzero, qpoisnonzero
    Density, cumulative probability and quantile function for
    a Poisson random variable conditioned to be nonzero.

    o dpoistrunc, ppoistrunc, qpoistrunc
    Density, cumulative probability and quantile function for
    the truncated Poisson distribution.

        CHANGES IN spatstat.random VERSION 3.4-5

OVERVIEW

    o New class of (theoretical) cluster process models

    o Inhomogeneous Poisson process in 3D.

    o Non-uniform random points in 3D.

    o Simple Sequential Inhibition in 3D.

    o Internal improvements.

NEW CLASSES

    o clusterprocess
    An object of this class represents a Neyman-Scott-Cox cluster process
    model with specified values of the parameters.

NEW FUNCTIONS

    o clusterprocess
    Create an object of class 'clusterprocess'.

    o clusterradius.clusterprocess
    Radius of the support of the offspring density of a cluster process model.

    o predict.clusterprocess
    Predict intensity of a cluster process model

    o print.clusterprocess
    Print a cluster process model

    o reach.clusterprocess
    Distance beyond which the pair correlation is effectively 1.

    o simulate.clusterprocess
    Generate simulated realisations of a cluster process model.

    o rpoint3
    Random points in three dimensions with any probability density

SIGNIFICANT USER-VISIBLE CHANGES

    o runifpoint3, rpoispp3
    New argument 'ex' (example point pattern, to be emulated)

    o rpoispp3
    Argument 'lambda' may now be a 'function(x,y,z)' so that an
    inhomogeneous Poisson process may be simulated.
    New argument 'lmax'.

    o rSSI
    Now supports three-dimensional random point patterns.
    Argument 'win' can be either a window (class 'owin')
    or a three-dimensional box ('box3').

        CHANGES IN spatstat.random VERSION 3.4-4

OVERVIEW

    o Minor improvements and bug fixes.

BUG FIXES

    o rjitter.psp
    Did not preserve marks attached to the segments.
    Fixed.

        CHANGES IN spatstat.random VERSION 3.4-3

OVERVIEW

    o Generate Gaussian Random Fields.

    o Internal improvements.

NEW FUNCTIONS

    o rGRFexpo, rGRFgauss, rGRFmatern, rGRFstable, rGRFgencauchy
    Generate a Gaussian Random Field.

        CHANGES IN spatstat.random VERSION 3.4-2

OVERVIEW

    o Efficiency improvements to runifdisc.

    o More options when simulating a fixed number of random points.

SIGNIFICANT USER-VISIBLE CHANGES

    o runifdisc
    Accelerated. New argument 'boxed'.

    o runifpoint, rpoint, rmpoint
    New argument 'fail.action' specifies what to do if the required number of
    random points cannot be generated.

        CHANGES IN spatstat.random VERSION 3.4-1

OVERVIEW

    o Internal fixes.

        CHANGES IN spatstat.random VERSION 3.4-0

OVERVIEW

    o We thank Murray Efford for contributions.

    o Conditional simulation in rLGCP, rThomas, rMatClust, rCauchy, rVarGamma.

SIGNIFICANT USER-VISIBLE CHANGES

    o rLGCP, rThomas, rMatClust, rCauchy, rVarGamma
    New arguments 'n.cond' and 'w.cond' specify conditional simulation.
    Every realisation will have exactly 'n = n.cond' points,
    or exactly 'n.cond' points inside window 'w.cond' if it is given.

        CHANGES IN spatstat.random VERSION 3.3-3

OVERVIEW

    o Improved algorithm for rpoispp when intensity is defined by tessellation.

SIGNIFICANT USER-VISIBLE CHANGES

    o rpoispp
    Improved algorithm in the case where the intensity 'lambda' is
    a function of class 'tessfun' representing a function which is
    constant on each tile of a tessellation.


To generate a diff of this commit:
cvs rdiff -u -r1.2 -r1.3 pkgsrc/geography/R-spatstat.random/Makefile \
    pkgsrc/geography/R-spatstat.random/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/geography/R-spatstat.random/Makefile
diff -u pkgsrc/geography/R-spatstat.random/Makefile:1.2 pkgsrc/geography/R-spatstat.random/Makefile:1.3
--- pkgsrc/geography/R-spatstat.random/Makefile:1.2     Sun Dec  1 14:03:45 2024
+++ pkgsrc/geography/R-spatstat.random/Makefile Fri Jun 12 14:09:17 2026
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.2 2024/12/01 14:03:45 mef Exp $
+# $NetBSD: Makefile,v 1.3 2026/06/12 14:09:17 mef Exp $
 
 R_PKGNAME=     spatstat.random
-R_PKGVER=      3.3-2
+R_PKGVER=      3.5-0
 CATEGORIES=    geography
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
@@ -11,6 +11,7 @@ LICENSE=      gnu-gpl-v2 OR gnu-gpl-v3
 DEPENDS+=      R-spatstat.data>=3.0:../../geography/R-spatstat.data
 DEPENDS+=      R-spatstat.geom>=3.2.1:../../geography/R-spatstat.geom
 DEPENDS+=      R-spatstat.utils>=3.0.2:../../geography/R-spatstat.utils
+DEPENDS+=      R-spatstat.sparse-[0-9]*:../../geography/R-spatstat.sparse
 
 TEST_DEPENDS+= R-spatstat.linnet-[0-9]*:../../geography/R-spatstat.linnet
 TEST_DEPENDS+= R-spatstat.explore-[0-9]*:../../geography/R-spatstat.explore
Index: pkgsrc/geography/R-spatstat.random/distinfo
diff -u pkgsrc/geography/R-spatstat.random/distinfo:1.2 pkgsrc/geography/R-spatstat.random/distinfo:1.3
--- pkgsrc/geography/R-spatstat.random/distinfo:1.2     Sun Dec  1 14:03:45 2024
+++ pkgsrc/geography/R-spatstat.random/distinfo Fri Jun 12 14:09:17 2026
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.2 2024/12/01 14:03:45 mef Exp $
+$NetBSD: distinfo,v 1.3 2026/06/12 14:09:17 mef Exp $
 
-BLAKE2s (R/spatstat.random_3.3-2.tar.gz) = 68d8a8ec06f06642dea1a5d4a34544cac888b9a3bac3e236b5d1f065f7737a74
-SHA512 (R/spatstat.random_3.3-2.tar.gz) = 8118006dac95e327b3c00ec2df7fcd428d397fd97b30cc0ad6c8d9fe0d45b0b3e5f8cc2c5bdb5f2b53dc1db18efec41d87f2919526e21de7917f5b34380becc7
-Size (R/spatstat.random_3.3-2.tar.gz) = 264896 bytes
+BLAKE2s (R/spatstat.random_3.5-0.tar.gz) = dae4e510223e7e0e23d70e18c8059ee8d5a0c8ab1ac172e81cdb198c47cbb4a8
+SHA512 (R/spatstat.random_3.5-0.tar.gz) = 9cc419fe8dbab2e46a98eee7ace4945dcd9306062191194f8e174d5dd4bf672563c2bf8f3500d7df4fd7cb63a81fb9d600b47a42de55d022ff9c1cb8f118442f
+Size (R/spatstat.random_3.5-0.tar.gz) = 289572 bytes