CVS commit: pkgsrc/math/R-plyr

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Mon May 25 15:02:10 UTC 2026

Modified Files:
        pkgsrc/math/R-plyr: Makefile distinfo
Added Files:
        pkgsrc/math/R-plyr/patches: patch-src_Makevars

Log Message:
(math/R-plyr) Fix against R 4.6.0 (-lexecinfo)


To generate a diff of this commit:
cvs rdiff -u -r1.13 -r1.14 pkgsrc/math/R-plyr/Makefile
cvs rdiff -u -r1.12 -r1.13 pkgsrc/math/R-plyr/distinfo
cvs rdiff -u -r0 -r1.1 pkgsrc/math/R-plyr/patches/patch-src_Makevars

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-plyr/Makefile
diff -u pkgsrc/math/R-plyr/Makefile:1.13 pkgsrc/math/R-plyr/Makefile:1.14
--- pkgsrc/math/R-plyr/Makefile:1.13    Sat Feb  3 12:03:16 2024
+++ pkgsrc/math/R-plyr/Makefile Mon May 25 15:02:10 2026
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.13 2024/02/03 12:03:16 mef Exp $
+# $NetBSD: Makefile,v 1.14 2026/05/25 15:02:10 mef Exp $
 
 R_PKGNAME=     plyr
 R_PKGVER=      1.8.9
@@ -17,6 +17,8 @@ TEST_DEPENDS+=        R-itertools-[0-9]*:../../
 TEST_DEPENDS+= R-testthat-[0-9]*:../../devel/R-testthat
 
 USE_LANGUAGES+=        c c++
+# make the patch works more portable
+USE_TOOLS+=    gmake
 
 .include "../../math/R/Makefile.extension"
 .include "../../devel/R-Rcpp/buildlink3.mk"

Index: pkgsrc/math/R-plyr/distinfo
diff -u pkgsrc/math/R-plyr/distinfo:1.12 pkgsrc/math/R-plyr/distinfo:1.13
--- pkgsrc/math/R-plyr/distinfo:1.12    Sat Feb  3 12:03:16 2024
+++ pkgsrc/math/R-plyr/distinfo Mon May 25 15:02:10 2026
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.12 2024/02/03 12:03:16 mef Exp $
+$NetBSD: distinfo,v 1.13 2026/05/25 15:02:10 mef Exp $
 
 BLAKE2s (R/plyr_1.8.9.tar.gz) = ea5238e97aa35d54c1608ea7230f7da1cef4bc7326de9a82d735ade5c87969e0
 SHA512 (R/plyr_1.8.9.tar.gz) = ebd4e817df16a5847ddd8239ef99cf54b46dcb19cb51ade53e58c0d66a6d5ffd241daa258c167468fe5284f0168c13e1760abada60f7e7b22b7e0a32150ec596
 Size (R/plyr_1.8.9.tar.gz) = 401488 bytes
+SHA1 (patch-src_Makevars) = 8844b6a77926177feb35420349ab82a967fbbfa4

Added files:

Index: pkgsrc/math/R-plyr/patches/patch-src_Makevars
diff -u /dev/null pkgsrc/math/R-plyr/patches/patch-src_Makevars:1.1
--- /dev/null   Mon May 25 15:02:10 2026
+++ pkgsrc/math/R-plyr/patches/patch-src_Makevars       Mon May 25 15:02:10 2026
@@ -0,0 +1,28 @@
+$NetBSD: patch-src_Makevars,v 1.1 2026/05/25 15:02:10 mef Exp $
+
+symbol backtrace_symbols is defined in /usr/lib/libexecinfo
+
+---------------------------------
+** testing if installed package can be loaded from temporary location
+Error: package or namespace load failed for 'plyr' in dyn.load(file, DLLpath = DLLpath, ...):
+ unable to load shared object '/tmp/math/R-plyr/work/.destdir/usr/pkg/lib/R/library/00LOCK-plyr/00new/plyr/libs/plyr.so':
+  /tmp/math/R-plyr/work/.destdir/usr/pkg/lib/R/library/00LOCK-plyr/00new/plyr/libs/plyr.so: Undefined PLT symbol "backtrace_symbols" (symnum = 111)
+Error: loading failed
+Execution halted
+ERROR: loading failed
+---------------------------------
+
+--- /dev/null  2026-05-25 23:49:38.565140977 +0900
++++ src/Makevars       2026-05-25 23:54:14.584419265 +0900
+@@ -0,0 +1,11 @@
++ #### Debugging flags ####
++ # Uncomment to enable thread assertions
++ # PKG_CPPFLAGS += -DDEBUG_THREAD -UNDEBUG
++
++UNAME := $(shell uname)
++
++ifneq ($(UNAME), Linux)
++ifneq ($(UNAME), SunOS)
++PKG_LIBS += -lexecinfo
++endif
++endif